- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-5-2-1-mer
- Ligands
- 5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.1: 17 residues within 4Å:- Chain A: G.13, S.14, G.15, L.16, K.18, G.156, D.157, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.2
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:G.13, A:S.14, A:G.15, A:L.16, A:D.157, A:D.157, A:K.213, A:E.214, A:E.214, A:G.302, A:K.336
- Salt bridges: A:K.18, A:K.18
- pi-Stacking: A:Y.306
ADP.3: 16 residues within 4Å:- Chain B: G.13, S.14, G.15, L.16, K.18, G.156, D.157, R.210, K.213, E.214, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.4
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:S.14, B:G.15, B:L.16, B:D.157, B:D.157, B:D.157, B:K.213, B:E.214, B:G.302, B:T.303, B:K.336
- Salt bridges: B:K.18, B:K.18
- pi-Stacking: B:Y.306
ADP.5: 16 residues within 4Å:- Chain C: G.13, S.14, G.15, L.16, K.18, G.156, D.157, R.210, K.213, E.214, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.6
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:G.15, C:L.16, C:D.157, C:D.157, C:K.213, C:E.214, C:E.214, C:G.302, C:K.336
- Salt bridges: C:K.18, C:K.18
- pi-Stacking: C:Y.306
ADP.7: 16 residues within 4Å:- Chain D: G.13, S.14, G.15, L.16, K.18, G.156, D.157, R.210, K.213, E.214, G.301, G.302, T.303, Y.306, K.336
- Ligands: MG.8
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:G.15, D:L.16, D:D.157, D:D.157, D:K.213, D:E.214, D:E.214, D:G.302, D:K.336
- Salt bridges: D:K.18, D:K.18
- pi-Stacking: D:Y.306
ADP.9: 17 residues within 4Å:- Chain E: G.13, S.14, G.15, L.16, K.18, G.156, D.157, R.210, K.213, E.214, G.301, G.302, T.303, M.305, Y.306, K.336
- Ligands: MG.10
11 PLIP interactions:11 interactions with chain E- Hydrogen bonds: E:G.15, E:L.16, E:D.157, E:D.157, E:D.157, E:K.213, E:E.214, E:G.302, E:K.336
- Salt bridges: E:K.18, E:K.18
- 5 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.2: 1 residues within 4Å:- Ligands: ADP.1
No protein-ligand interaction detected (PLIP)MG.4: 2 residues within 4Å:- Chain B: Q.137
- Ligands: ADP.3
No protein-ligand interaction detected (PLIP)MG.6: 2 residues within 4Å:- Chain C: Q.137
- Ligands: ADP.5
No protein-ligand interaction detected (PLIP)MG.8: 2 residues within 4Å:- Chain D: Q.137
- Ligands: ADP.7
No protein-ligand interaction detected (PLIP)MG.10: 2 residues within 4Å:- Chain E: Q.137
- Ligands: ADP.9
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gong, R. et al., Afadin mediates cadherin-catenin complex clustering on F-actin linked to cooperative binding and filament curvature. Biorxiv (2024)
- Release Date
- 2024-10-30
- Peptides
- Actin, alpha skeletal muscle: ABCDE
Catenin alpha-1: FH
Afadin: G - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FH
HG
G
SMTL ID : 9dva.1
F-actin binding interface of alpha-E-catenin ABD (cadherin-catenin complex) and afadin
Actin, alpha skeletal muscle
Toggle Identical (ABCDE)Catenin alpha-1
Toggle Identical (FH)Afadin
Related Entries With Identical Sequence
1h1v.1 | 1j6z.1 | 1kxp.1 | 1lot.1 | 1m8q.1 | 1ma9.1 | 1mvw.1 | 1nwk.1 | 1o18.1 | 1o19.1 | 1o1a.1 | 1o1b.1 | 1o1c.1 | 1o1d.1 | 1o1e.1 | 1o1f.1 | 1o1g.1 | 1qz5.1 | 1qz6.1 | 1rdw.1 | 1rfq.1 | 1s22.1 | 1wua.1 | 1y64.1 | 1yxq.1 | 2a3z.1 | 2a40.1 | 2a40.2 | 2a40.3 | 2a41.1 more...less...2a42.1 | 2a5x.1 | 2asm.1 | 2aso.1 | 2asp.1 | 2d1k.1 | 2ff3.1 | 2ff6.1 | 2fxu.1 | 2hmp.1 | 2pav.1 | 2q0r.1 | 2q0u.1 | 2q1n.1 | 2q1n.2 | 2q31.1 | 2q31.2 | 2q36.1 | 2q97.1 | 2q97.2 | 2vcp.1 | 2vcp.2 | 2y83.1 | 2zwh.1 | 3buz.1 | 3hbt.1 | 3j4k.1 | 3j8a.1 | 3jbi.1 | 3jbj.1 | 3jbk.1 | 3m1f.1 | 3m3n.1 | 3mfp.1 | 3mfp.2 | 3mfp.3 | 3sjh.1 | 3tpq.1 | 3u8x.1 | 3u8x.2 | 3u9d.1 | 3u9d.2 | 3u9z.1 | 3ue5.1 | 3ue5.2 | 3ue5.3 | 4a7f.1 | 4a7h.1 | 4a7l.1 | 4a7n.1 | 4gy2.1 | 4h03.1 | 4h0t.1 | 4h0v.1 | 4h0x.1 | 4h0y.1 | 4k41.1 | 4k42.1 | 4k42.2 | 4k42.3 | 4k42.4 | 4k43.1 | 4k43.2 | 4pl8.1 | 4v0u.6 | 4v0u.7 | 4v0u.8 | 4v0u.9 | 4v0u.10 | 5h53.1 | 5jlf.1 | 5mva.1 | 5mvy.1 | 5onv.1 | 5ooc.1 | 5ood.1 | 5ooe.1 | 5oof.1 | 5yu8.1 | 6c1d.1 | 6c1g.1 | 6c1h.1 | 6d8c.1 | 6djm.1 | 6djn.1 | 6djo.1 | 6fhl.1 | 6fm2.1 | 6kll.1 | 6kln.1 | 6kn7.1 | 6kn8.1 | 6rsw.1 | 6t1y.1 | 6t20.1 | 6t23.1 | 6t24.1 | 6t25.1 | 6upv.1 | 6upw.1 | 6yp9.1 | 7c2f.1 | 7c2f.2 | 7k20.1 | 7k21.1 | 7ko4.1 | 7ko5.1 | 7ko7.1 | 7kon.1 | 7kor.1 | 7nxv.1 | 7nxv.2 | 7nzm.1 | 7t5q.1 | 8a2r.1 | 8a2s.1 | 8a2t.1 | 8a2u.1 | 8a2y.1 | 8a2z.1 | 8bjh.1 | 8bji.1 | 8bjj.1 | 8bo1.1 | 8bo1.2 | 8br0.1 | 8br0.2 | 8br1.1 | 8br1.2 | 8dmx.1 | 8e9b.1 | 8of8.1 | 8ru0.1 | 8rv2.1 | 8syf.1 | 8uee.1 | 8viz.1 | 8vkh.1 | 9duu.1 | 9fjo.1