SMTL ID : 9e31.1 (2 other biounits)

Discovery of Potent, Highly Selective and Efficacious SMARCA2 Degraders - Compound 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x 01: (12'R)-4'-chloro-9'-(piperidin-4-yl)-5'H-spiro[cyclohexane-1,7'-indolo[1,2-a]quinazolin]-5'-one

01.1: 15 residues within 4Å: Chain A: V.38, F.39, Q.41, L.42, P.43, E.47, L.48, Y.51, V.59, D.60, L.86, A.90, F.93, N.94, I.100 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.42, A:P.43, A:L.48, A:D.60, A:F.93, A:I.100 Hydrogen bonds: A:E.47, A:Y.51, A:N.94 pi-Stacking: A:F.39, A:Y.51 Halogen bonds: A:L.86

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: H.88 Ligands: ACT.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.88, ACT.3

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 2 residues within 4Å: Chain A: H.88 Ligands: ZN.2 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.56 Salt bridges: A:H.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Z. et al., Discovery of Potent, Highly Selective, and Efficacious SMARCA2 Degraders. J.Med.Chem. (2024)

Release Date

2024-12-18

Peptides

Isoform Short of Probable global transcription activator SNF2L2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform Short of Probable global transcription activator SNF2L2

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