- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.24 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 1 x FX8: (2~{S},4~{R})-~{N}-[[2-[2-[2-[2-[4-[3-azanyl-6-(2-hydroxyphenyl)pyridazin-4-yl]piperazin-1-yl]ethoxy]ethoxy]ethoxy]-4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl]-1-[(2~{S})-2-[(1-fluoranylcyclopropyl)carbonylamino]-3,3-dimethyl-butanoyl]-4-oxidanyl-pyrrolidine-2-carboxamide(Non-covalent)
- 11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 2 residues within 4Å:- Chain B: P.30
- Chain C: E.77
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain C- Water bridges: B:P.30, B:R.31, B:R.110, C:E.77
- Hydrogen bonds: C:E.77
EDO.3: 6 residues within 4Å:- Chain B: T.73, D.75, Q.113, R.116, S.117, P.141
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.75, B:R.116
EDO.4: 6 residues within 4Å:- Chain A: Q.99
- Chain B: R.57, I.58, H.59
- Ligands: FX8.1, EDO.5
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:H.59
EDO.5: 7 residues within 4Å:- Chain A: S.98, Q.99, I.100
- Chain B: H.59, Y.61
- Ligands: FX8.1, EDO.4
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:Q.99, A:I.100, B:Y.61
EDO.7: 5 residues within 4Å:- Chain C: E.49, I.50, E.87, M.90, A.91
No protein-ligand interaction detected (PLIP)EDO.8: 6 residues within 4Å:- Chain B: R.28, S.29, P.30
- Chain C: E.74, I.75, P.76
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:E.74, C:I.75
- Water bridges: C:E.74, C:I.75, C:E.77, B:S.29
EDO.9: 3 residues within 4Å:- Chain C: S.71, S.72, T.73
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:S.72, C:S.72, C:T.73, C:T.73, C:T.73
- Water bridges: C:S.72, B:Q.81
EDO.10: 4 residues within 4Å:- Chain D: D.48, Q.49, L.50
- Ligands: EDO.13
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:L.50
EDO.11: 4 residues within 4Å:- Chain D: K.46, D.47, A.73, T.74
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:T.74, D:T.74
- Water bridges: D:P.72, D:T.74
EDO.12: 2 residues within 4Å:- Chain D: M.6, F.93
1 PLIP interactions:1 interactions with chain C- Water bridges: C:S.56
EDO.13: 4 residues within 4Å:- Chain D: Y.45, D.48, L.88
- Ligands: EDO.10
No protein-ligand interaction detected (PLIP)- 1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Farnaby, W. et al., BAF complex vulnerabilities in cancer demonstrated via structure-based PROTAC design. Nat.Chem.Biol. (2019)
- Release Date
- 2019-06-12
- Peptides
- Probable global transcription activator SNF2L2: A
von Hippel-Lindau disease tumor suppressor: B
Elongin-C: C
Elongin-B: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
SMTL ID : 6hay.2 (1 other biounit)
Crystal structure of PROTAC 1 in complex with the bromodomain of human SMARCA2 and pVHL:ElonginC:ElonginB
Probable global transcription activator SNF2L2
von Hippel-Lindau disease tumor suppressor
Elongin-C
Elongin-B
Related Entries With Identical Sequence
1lqb.1 | 1lqb.2 | 2c9w.1 | 2izv.1 | 3dcg.1 | 3dcg.2 | 3zng.1 | 3zng.2 | 3zrc.1 | 3zrc.2 | 3zrc.3 | 3zrc.4 | 3zrf.1 | 3zrf.2 | 3zrf.3 | 3zrf.4 | 3ztc.1 | 3ztc.2 | 3ztc.3 | 3ztc.4 | 3ztd.1 | 3ztd.2 | 3ztd.3 | 3ztd.4 | 3zun.1 | 3zun.2 | 3zun.3 | 3zun.4 | 4ajy.1 | 4awj.1 more...less...4awj.2 | 4awj.3 | 4awj.4 | 4b95.1 | 4b95.2 | 4b95.3 | 4b95.4 | 4b9k.1 | 4b9k.2 | 4b9k.3 | 4b9k.4 | 4bks.1 | 4bks.2 | 4bks.3 | 4bks.4 | 4bkt.1 | 4bkt.2 | 4bkt.3 | 4bkt.4 | 4qy4.1 | 4qy4.2 | 4qy4.3 | 4w9c.1 | 4w9c.2 | 4w9c.3 | 4w9c.4 | 4w9d.1 | 4w9d.2 | 4w9d.3 | 4w9d.4 | 4w9e.1 | 4w9e.2 | 4w9e.3 | 4w9e.4 | 4w9f.1 | 4w9f.2 | 4w9f.3 | 4w9f.4 | 4w9g.1 | 4w9g.2 | 4w9g.3 | 4w9g.4 | 4w9h.1 | 4w9h.2 | 4w9h.3 | 4w9h.4 | 4w9i.1 | 4w9i.2 | 4w9i.3 | 4w9i.4 | 4w9j.1 | 4w9j.2 | 4w9j.3 | 4w9j.4 | 4w9k.1 | 4w9k.2 | 4w9k.3 | 4w9k.4 | 4w9l.1 | 4w9l.2 | 4w9l.3 | 4w9l.4 | 5bo4.1 | 5bo4.2 | 5bo4.3 | 5bo4.4 | 5bo4.5 | 5bo4.6 | 5dkc.1 | 5dkh.1 | 5dkh.2 | 5dkh.3 | 5lli.1 | 5lli.2 | 5lli.3 | 5lli.4 | 5n4w.1 | 5nvv.1 | 5nvv.2 | 5nvv.3 | 5nvv.4 | 5nvw.1 | 5nvw.2 | 5nvw.3 | 5nvw.4 | 5nvx.1 | 5nvx.2 | 5nvx.3 | 5nvx.4 | 5nvy.1 | 5nvy.2 | 5nvy.3 | 5nvy.4 | 5nvz.1 | 5nvz.2 | 5nvz.3 | 5nvz.4 | 5nw0.1 | 5nw0.2 | 5nw0.3 | 5nw0.4 | 5nw1.1 | 5nw1.2 | 5nw1.3 | 5nw1.4 | 5nw2.1 | 5nw2.2 | 5nw2.3 | 5nw2.4 | 5t35.1 | 5t35.2 | 6bvb.1 | 6fmi.1 | 6fmi.2 | 6fmj.1 | 6fmj.2 | 6fmj.3 | 6fmj.4 | 6fmk.1 | 6fmk.2 | 6fmk.3 | 6fmk.4 | 6gfx.1 | 6gfy.1 | 6gfy.2 | 6gfy.3 | 6gfy.4 | 6gfz.1 | 6gfz.2 | 6gfz.3 | 6gfz.4 | 6gmn.1 | 6gmn.2 | 6gmn.3 | 6gmn.4 | 6gmq.1 | 6gmq.2 | 6gmq.3 | 6gmq.4 | 6gmr.1 | 6gmx.1 | 6gmx.2 | 6gmx.3 | 6gmx.4 | 6hax.1 | 6hax.2 | 6hay.1 | 6haz.1 | 6hr2.1 | 6hr2.2 | 6i4x.1 | 6i5j.1 | 6i5j.2 | 6i5n.1 | 6i5n.2 | 6r7h.1 | 6r7n.1 | 6sis.1 | 6sis.2 | 6v9h.1 | 7jto.1 | 7jtp.1 | 7q2j.1 | 7s4e.1 | 7s4e.2 | 7z6l.1 | 7z76.1 | 7z77.1 | 7z78.1 | 7z78.2 | 7z78.3 | 7zlm.1 | 7zlm.2 | 7zlm.3 | 7zlm.4 | 7zln.1 | 7zlo.1 | 7zlp.1 | 7zlr.1 | 7zls.1 | 7zls.2 | 7zls.3 | 7zls.4 | 7znt.1 | 7znt.2 | 8bb2.1 | 8bb3.1 | 8bb4.1 | 8bb5.1 | 8bdi.1 | 8bdi.2 | 8bdi.3 | 8bdi.4 | 8bdj.1 | 8bdj.2 | 8bdj.3 | 8bdj.4 | 8bdl.1 | 8bdl.2 | 8bdl.3 | 8bdl.4 | 8bdm.1 | 8bdm.2 | 8bdm.3 | 8bdm.4 | 8bdn.1 | 8bdn.2 | 8bdn.3 | 8bdn.4 | 8bdo.1 | 8bdo.2 | 8bds.1 | 8bdt.1 | 8bdt.2 | 8bdx.1 | 8bdx.2 | 8beb.1 | 8cqe.1 | 8cqe.2 | 8cqe.3 | 8cqe.4 | 8cqk.1 | 8cql.1 | 8ebn.1 | 8g1p.1 | 8g1p.2 | 8g1q.1 | 8ij1.1 | 8je1.1 | 8je2.1 | 8p0f.1 | 8p0f.2 | 8pc2.1 | 8pc2.2 | 8qjr.1 | 8qjr.2 | 8qjs.1 | 8qjs.2 | 8qjs.3 | 8qjs.4 | 8qjt.1 | 8qjt.2 | 8qjt.3 | 8qvu.1 | 8qvu.2 | 8qw6.1 | 8qw6.2 | 8qw7.1 | 8qw7.2 | 8rwz.1 | 8rx0.1 | 8sh2.1 | 8wdk.1 | 8y1u.1 | 8zv8.1 | 8zv8.2 | 8zv8.3 | 8zv8.4 | 8zvj.1 | 8zvj.2 | 8zvj.3 | 8zvj.4 | 9bju.1 | 9bju.2 | 9bju.3 | 9bju.4 | 9bol.1 | 9bol.2 | 9d1i.1 | 9d1y.1 | 9d1z.1 | 9e1k.1 | 9e1k.2 | 9e1k.3 | 9e30.1 | 9e30.2 | 9e30.3 | 9e31.1 | 9e31.2 | 9e31.3 | 9eqj.1 | 9eqj.2 | 9eqm.1 | 9ipw.1 | 9ipw.2 | 9ipw.3 | 9ipw.4 | 9laf.1 | 9qac.1 | 9qac.2 | 9qac.3 | 9qad.1 | 9qad.2 | 9qad.3 | 9qe4.1 | 9qe4.2 | 9qe4.3 | 9qe4.4 | 9qe5.1 | 9qe5.2 | 9qe5.3 | 9qe5.4