SMTL ID : 9e3c.1

Cryo-EM structure of PRMT5/WDR77 in complex with 6S complex (GRG local refine)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 25 residues within 4Å: Chain A: P.314, L.315, L.319, Y.324, F.327, K.333, Y.334, G.365, A.366, G.367, R.368, P.370, L.371, V.391, E.392, K.393, N.394, S.418, D.419, M.420, R.421, E.435, L.436, C.449 Chain B: R.121 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.327 Hydrogen bonds: A:Y.324, A:K.333, A:Y.334, A:G.365, A:K.393, A:K.393, A:N.394, A:D.419, A:M.420, A:R.421, A:E.435, A:E.435 pi-Cation interactions: A:K.393

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jin, C.Y. et al., Substrate adaptors are flexible tethering modules that enhance substrate methylation by the arginine methyltransferase PRMT5. J.Biol.Chem. (2025)

Release Date

2025-02-19

Peptides

Protein arginine N-methyltransferase 5: A
Small nuclear ribonucleoprotein Sm D1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
J

B
M

Protein arginine N-methyltransferase 5

Small nuclear ribonucleoprotein Sm D1

Related Entries With Identical Sequence