SMTL ID : 9e7l.1

Yeast V-ATPase Vo proton channel bound to nanobody 2WVA7

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-8-8-1-1-1-1-mer

Ligands

None

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH

Citation

Knight, K. et al., Monoclonal nanobodies alter the activity and assembly of the yeast vacuolar H + -ATPase. Biorxiv (2025)

Release Date

2025-02-05

Peptides

V-type proton ATPase subunit d: A
V-type proton ATPase subunit c'': B
V-type proton ATPase subunit c': C
Nanobody 2WVA7: DOPQSTUV
V-type proton ATPase subunit c: EFGHIJKR
V-type proton ATPase subunit e: L
V0 assembly protein 1: M
Yeast V-ATPase subunit f: N
V-type proton ATPase subunit a, vacuolar isoform: W

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

D
X

O
W

P
V

Q
U

S
T

T
S

U
R

V
Q

E
F

F
G

G
H

H
I

I
J

J
K

K
L

R
E

L
M

M
N

N
O

W
A

Membrane

We predict this structure to be a membrane protein.
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V-type proton ATPase subunit d

V-type proton ATPase subunit c''

V-type proton ATPase subunit c'

Nanobody 2WVA7

V-type proton ATPase subunit c

V-type proton ATPase subunit e

V0 assembly protein 1

Yeast V-ATPase subunit f

V-type proton ATPase subunit a, vacuolar isoform

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