SMTL ID : 9e7o.1

Pfs230 D13D14 in complex with nanobody W2810

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: D.62 Chain B: T.39, F.68, N.129, S.131, L.132, V.146, K.148 No protein-ligand interaction detected (PLIP)

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: A.33, S.52, W.53, P.100, S.102 Chain B: N.59 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.53, A:S.102 Water bridges: A:A.33, A:S.102 EDO.3: 5 residues within 4Å: Chain A: S.52, W.53, S.54, G.56, S.57 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.52, A:W.53, A:S.54, A:G.56, A:S.57 Water bridges: A:S.57 EDO.4: 10 residues within 4Å: Chain A: S.50, I.51, S.52, S.57, I.58, R.59, S.102 Chain B: N.59, E.65, N.66 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.52, A:R.59, A:S.102, A:S.102, B:N.66 Water bridges: B:N.59 EDO.5: 4 residues within 4Å: Chain B: I.100, D.102, I.107, Q.109 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.107

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.6: 5 residues within 4Å: Chain B: N.193, K.256, E.257, S.258, P.282 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.193 NAG.7: 5 residues within 4Å: Chain B: N.182, D.183, D.184, Y.271, N.273 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dietrich, M.H. et al., Cryo-EM structure of the native Pfs230 and Pfs48/45 fertilisation complex from Plasmodium falciparum. To Be Published

Release Date

2025-07-30

Peptides

Nanobody W2810: A
Gametocyte surface protein P230: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nanobody W2810

Gametocyte surface protein P230

Related Entries With Identical Sequence