SMTL ID : 9e7r.1

CryoEM structure of PAR2 with GB88

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.18 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 01: N-[(2S)-3-cyclohexyl-1-{[(2S,3S)-3-methyl-1-oxo-1-(spiro[indene-1,4'-piperidin]-1'-yl)pentan-2-yl]amino}-1-oxopropan-2-yl]-1,2-oxazole-5-carboxamide

01.1: 16 residues within 4Å: Chain B: V.1, S.5, V.8, L.9, I.158, H.167, D.168, V.169, L.170, L.175, H.250, Y.251, I.254, S.260, Y.263, A.264 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:V.1, B:V.8, B:L.9, B:I.158, B:V.169, B:V.169, B:L.175, B:I.254, B:Y.263 Hydrogen bonds: B:D.168, B:L.170, B:S.260, B:S.260 pi-Stacking: B:Y.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyu, Z. et al., Structural basis for the activation of proteinase-activated receptors PAR1 and PAR2. Nat Commun (2025)

Release Date

2025-05-07

Peptides

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: A
Proteinase-activated receptor 2: B
Guanine nucleotide-binding protein G(q) subunit alpha chimera: C
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
R

C
A

D
B

E
E

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Proteinase-activated receptor 2

Guanine nucleotide-binding protein G(q) subunit alpha chimera

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

scFv16

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