SMTL ID : 9jh5.1

Activation mechanism of CYSLTR2 by C16:0 ceramide

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x 16C: N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2-YL)PALMITAMIDE(Non-covalent)

16C.1: 14 residues within 4Å: Chain A: Y.116, Y.119, Y.123, Y.127, I.166, S.170, I.195, A.196, L.198, N.202, R.267, H.270, L.271, K.275 Protein-ligand interaction information (PLIP) not available

2 x CLR: CHOLESTEROL(Non-covalent)(Covalent)

CLR.2: 5 residues within 4Å: Chain A: F.137, I.219, C.220, L.223 Ligands: CLR.3 Protein-ligand interaction information (PLIP) not available CLR.3: 8 residues within 4Å: Chain A: V.134, L.138, H.142, R.145, L.147, F.215, T.216 Ligands: CLR.2 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, S. et al., Sensing ceramides by CYSLTR2 and P2RY6 to aggravate atherosclerosis. Nature (2025)

Release Date

2025-04-23

Peptides

Cysteinyl leukotriene receptor 2: A
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: B
scFv16: C
Guanine nucleotide-binding protein G(i) subunit alpha-1: D
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: E
Nb35: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
C

C
S

D
A

E
B

F
N

Cysteinyl leukotriene receptor 2

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Nb35

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