SMTL ID : 8j6i.1

Cryo-EM structure of thehydroxycarboxylic acid receptor 2-Gi protein complex bound MK-6892

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x FI7: 2-[[2,2-dimethyl-3-[3-(5-oxidanylpyridin-2-yl)-1,2,4-oxadiazol-5-yl]propanoyl]amino]cyclohexene-1-carboxylic acid(Non-covalent)

FI7.1: 19 residues within 4Å: Chain A: L.83, Y.87, L.104, L.107, A.108, R.111, Q.112, L.158, H.161, L.162, S.178, S.179, F.180, H.189, M.192, E.196, F.277, L.280, Y.284 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.83, A:L.83, A:L.104, A:A.108, A:F.180, A:F.277, A:L.280 Hydrogen bonds: A:Y.284, A:Y.284 Salt bridges: A:R.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, S. et al., Molecular recognition of niacin and lipid-lowering drugs by the human hydroxycarboxylic acid receptor 2. Cell Rep (2023)

Release Date

2024-04-03

Peptides

Hydroxycarboxylic acid receptor 2: A
Guanine nucleotide-binding protein G(i) subunit alpha-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
Scfv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
G

E
H

Membrane

We predict this structure to be a membrane protein.
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Hydroxycarboxylic acid receptor 2

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Scfv16

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