SMTL ID : 9e83.1

TMPRSS2 crystal structure following acylation by UCSF_157

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 3 residues within 4Å: Chain A: Q.176, G.177, N.178 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.176, A:N.178

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: T.86, L.164, T.166, M.169, W.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.164 Water bridges: A:K.85 EDO.4: 4 residues within 4Å: Chain A: Q.62, T.138, S.139, E.140 No protein-ligand interaction detected (PLIP) EDO.5: 2 residues within 4Å: Chain A: Y.159, Y.214 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.214

1 x VU4: 4-(2-aminoethyl)benzoic acid(Covalent)

VU4.3: 15 residues within 4Å: Chain A: D.180, S.181, C.182, Q.183, G.184, D.185, S.186, T.204, S.205, W.206, G.207, G.209, R.215, P.216, G.217 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.183, A:T.204 Hydrogen bonds: A:D.180, A:G.184, A:D.185, A:S.186 Water bridges: A:D.180

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.6: 2 residues within 4Å: Chain A: Y.230 Chain B: Y.45 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fraser, B.J. et al., High resolution TMPRSS2 structure following acylation by nafamostat. To Be Published

Release Date

2024-12-25

Peptides

Transmembrane protease serine 2: A
Transmembrane protease serine 2 non-catalytic chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Transmembrane protease serine 2

Transmembrane protease serine 2 non-catalytic chain

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