SMTL ID : 9es0.1

ATP-bound human mitochondrial Hsp60-Hsp10 football complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-14-14-mer

Ligands

14 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 25 residues within 4Å: Chain A: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.2, K.3 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.32, A:D.52, A:G.53, A:D.87, A:G.88, A:G.88, A:T.89, A:T.90, A:T.90, A:T.91, A:G.416, A:G.417, A:D.480, A:A.481, A:M.482, A:D.496 Water bridges: A:K.51, A:T.89, A:T.91, A:N.153, A:D.399, A:D.399, A:D.496 Salt bridges: A:K.51 ATP.4: 26 residues within 4Å: Chain C: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.5, K.6 26 PLIP interactions: 26 interactions with chain C Hydrogen bonds: C:G.32, C:D.52, C:D.52, C:G.53, C:D.87, C:G.88, C:G.88, C:T.89, C:T.90, C:T.90, C:T.91, C:G.416, C:G.417, C:D.480, C:A.481, C:M.482, C:D.496 Water bridges: C:K.51, C:T.89, C:N.153, C:D.399, C:D.399, C:D.496, C:D.496, C:D.496 Salt bridges: C:K.51 ATP.7: 26 residues within 4Å: Chain E: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.8, K.9 25 PLIP interactions: 25 interactions with chain E Hydrogen bonds: E:G.32, E:K.51, E:G.53, E:D.87, E:G.88, E:G.88, E:T.89, E:T.90, E:T.90, E:T.91, E:G.416, E:G.417, E:D.480, E:A.481, E:M.482, E:D.496 Water bridges: E:K.51, E:T.89, E:N.153, E:D.399, E:D.399, E:D.496, E:D.496, E:D.496 Salt bridges: E:K.51 ATP.10: 26 residues within 4Å: Chain G: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.11, K.12 26 PLIP interactions: 26 interactions with chain G Hydrogen bonds: G:G.32, G:D.52, G:D.52, G:G.53, G:D.87, G:G.88, G:G.88, G:T.89, G:T.90, G:T.90, G:T.91, G:G.416, G:G.417, G:D.480, G:A.481, G:M.482, G:D.496 Water bridges: G:K.51, G:T.89, G:T.91, G:N.153, G:D.399, G:D.399, G:D.496, G:D.496 Salt bridges: G:K.51 ATP.13: 26 residues within 4Å: Chain I: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.14, K.15 24 PLIP interactions: 24 interactions with chain I Hydrogen bonds: I:G.32, I:G.53, I:D.87, I:G.88, I:G.88, I:T.89, I:T.90, I:T.90, I:T.91, I:G.416, I:G.417, I:D.480, I:A.481, I:M.482, I:D.496 Water bridges: I:K.51, I:T.89, I:T.91, I:N.153, I:D.399, I:D.399, I:D.496, I:D.496 Salt bridges: I:K.51 ATP.16: 26 residues within 4Å: Chain K: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.17, K.18 25 PLIP interactions: 25 interactions with chain K Hydrogen bonds: K:G.32, K:D.52, K:D.52, K:G.53, K:D.87, K:G.88, K:G.88, K:T.89, K:T.90, K:T.90, K:T.91, K:G.416, K:G.417, K:D.480, K:A.481, K:M.482, K:D.496 Water bridges: K:K.51, K:T.91, K:N.153, K:D.399, K:D.399, K:D.496, K:D.496 Salt bridges: K:K.51 ATP.19: 26 residues within 4Å: Chain M: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.20, K.21 26 PLIP interactions: 26 interactions with chain M Hydrogen bonds: M:G.32, M:D.52, M:D.52, M:G.53, M:D.87, M:G.88, M:G.88, M:T.89, M:T.90, M:T.90, M:T.91, M:G.416, M:G.417, M:D.480, M:A.481, M:M.482, M:D.496 Water bridges: M:K.51, M:T.89, M:T.91, M:N.153, M:D.399, M:D.399, M:D.496, M:D.496 Salt bridges: M:K.51 ATP.22: 26 residues within 4Å: Chain O: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.23, K.24 25 PLIP interactions: 25 interactions with chain O Hydrogen bonds: O:G.32, O:K.51, O:G.53, O:G.88, O:G.88, O:T.89, O:T.89, O:T.90, O:T.90, O:T.91, O:T.91, O:G.416, O:G.417, O:D.480, O:D.480, O:A.481, O:M.482, O:D.496 Water bridges: O:K.51, O:K.51, O:T.91, O:N.153, O:D.496, O:D.496 Salt bridges: O:K.51 ATP.25: 26 residues within 4Å: Chain Q: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.26, K.27 25 PLIP interactions: 25 interactions with chain Q Hydrogen bonds: Q:G.32, Q:D.52, Q:G.53, Q:G.88, Q:G.88, Q:T.89, Q:T.89, Q:T.90, Q:T.90, Q:T.91, Q:T.91, Q:G.416, Q:G.417, Q:D.480, Q:D.480, Q:A.481, Q:M.482, Q:D.496 Water bridges: Q:K.51, Q:K.51, Q:T.91, Q:N.153, Q:D.496, Q:D.496 Salt bridges: Q:K.51 ATP.28: 26 residues within 4Å: Chain S: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.29, K.30 23 PLIP interactions: 23 interactions with chain S Hydrogen bonds: S:G.32, S:G.53, S:G.88, S:G.88, S:T.89, S:T.89, S:T.90, S:T.91, S:T.91, S:G.416, S:G.417, S:D.480, S:D.480, S:A.481, S:M.482, S:D.496 Water bridges: S:K.51, S:K.51, S:T.91, S:N.153, S:D.496, S:D.496 Salt bridges: S:K.51 ATP.31: 26 residues within 4Å: Chain U: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.32, K.33 25 PLIP interactions: 25 interactions with chain U Hydrogen bonds: U:G.32, U:D.52, U:G.53, U:G.88, U:G.88, U:T.89, U:T.89, U:T.90, U:T.90, U:T.91, U:T.91, U:G.416, U:G.417, U:D.480, U:D.480, U:A.481, U:M.482, U:D.496 Water bridges: U:K.51, U:K.51, U:T.91, U:N.153, U:D.496, U:D.496 Salt bridges: U:K.51 ATP.34: 26 residues within 4Å: Chain W: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.35, K.36 24 PLIP interactions: 24 interactions with chain W Hydrogen bonds: W:G.32, W:G.53, W:G.88, W:G.88, W:T.89, W:T.89, W:T.90, W:T.90, W:T.91, W:T.91, W:G.416, W:G.417, W:D.480, W:D.480, W:A.481, W:M.482, W:D.496 Water bridges: W:K.51, W:K.51, W:T.91, W:N.153, W:D.496, W:D.496 Salt bridges: W:K.51 ATP.37: 26 residues within 4Å: Chain Y: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.38, K.39 25 PLIP interactions: 25 interactions with chain Y Hydrogen bonds: Y:G.32, Y:D.52, Y:G.53, Y:G.88, Y:G.88, Y:T.89, Y:T.89, Y:T.90, Y:T.90, Y:T.91, Y:T.91, Y:G.416, Y:G.417, Y:D.480, Y:D.480, Y:A.481, Y:M.482, Y:D.496 Water bridges: Y:K.51, Y:K.51, Y:T.91, Y:N.153, Y:D.496, Y:D.496 Salt bridges: Y:K.51 ATP.40: 26 residues within 4Å: Chain 0: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.41, K.42 24 PLIP interactions: 24 interactions with chain 0 Hydrogen bonds: 0:G.32, 0:D.52, 0:G.53, 0:G.88, 0:G.88, 0:T.89, 0:T.89, 0:T.90, 0:T.90, 0:T.91, 0:T.91, 0:G.416, 0:G.417, 0:D.480, 0:D.480, 0:A.481, 0:M.482, 0:D.496 Water bridges: 0:K.51, 0:K.51, 0:T.91, 0:N.153, 0:D.496 Salt bridges: 0:K.51

14 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.87, S.151 Ligands: ATP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.87, H2O.1, H2O.8 MG.5: 3 residues within 4Å: Chain C: D.87, S.151 Ligands: ATP.4 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.87, H2O.13 MG.8: 3 residues within 4Å: Chain E: D.87, S.151 Ligands: ATP.7 3 PLIP interactions: 1 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:D.87, H2O.25, H2O.31 MG.11: 3 residues within 4Å: Chain G: D.87, S.151 Ligands: ATP.10 3 PLIP interactions: 1 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.87, H2O.38, H2O.45 MG.14: 3 residues within 4Å: Chain I: D.87, S.151 Ligands: ATP.13 3 PLIP interactions: 1 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:D.87, H2O.50, H2O.56 MG.17: 3 residues within 4Å: Chain K: D.87, S.151 Ligands: ATP.16 3 PLIP interactions: 1 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:D.87, H2O.62, H2O.69 MG.20: 3 residues within 4Å: Chain M: D.87, S.151 Ligands: ATP.19 2 PLIP interactions: 1 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:D.87, H2O.74 MG.23: 3 residues within 4Å: Chain O: D.87, S.151 Ligands: ATP.22 3 PLIP interactions: 1 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:D.87, H2O.86, H2O.94 MG.26: 3 residues within 4Å: Chain Q: D.87, S.151 Ligands: ATP.25 2 PLIP interactions: 1 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: Q:D.87, H2O.99 MG.29: 3 residues within 4Å: Chain S: D.87, S.151 Ligands: ATP.28 3 PLIP interactions: 1 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:D.87, H2O.111, H2O.117 MG.32: 3 residues within 4Å: Chain U: D.87, S.151 Ligands: ATP.31 3 PLIP interactions: 1 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:D.87, H2O.123, H2O.130 MG.35: 3 residues within 4Å: Chain W: D.87, S.151 Ligands: ATP.34 3 PLIP interactions: 1 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:D.87, H2O.135, H2O.142 MG.38: 3 residues within 4Å: Chain Y: D.87, S.151 Ligands: ATP.37 3 PLIP interactions: 1 interactions with chain Y, 2 Ligand-Water interactions Metal complexes: Y:D.87, H2O.148, H2O.154 MG.41: 3 residues within 4Å: Chain 0: D.87, S.151 Ligands: ATP.40 2 PLIP interactions: 1 interactions with chain 0, 1 Ligand-Water interactions Metal complexes: 0:D.87, H2O.160

14 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: T.30, K.51, T.90 Ligands: ATP.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:T.30, A:T.30, A:K.51, A:T.90 K.6: 4 residues within 4Å: Chain C: T.30, K.51, T.90 Ligands: ATP.4 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:T.30, C:T.30, C:K.51, C:T.90 K.9: 4 residues within 4Å: Chain E: T.30, K.51, T.90 Ligands: ATP.7 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:T.30, E:T.30, E:K.51, E:T.90 K.12: 4 residues within 4Å: Chain G: T.30, K.51, T.90 Ligands: ATP.10 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:T.30, G:T.30, G:K.51, G:T.90 K.15: 4 residues within 4Å: Chain I: T.30, K.51, T.90 Ligands: ATP.13 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:T.30, I:T.30, I:K.51, I:T.90 K.18: 4 residues within 4Å: Chain K: T.30, K.51, T.90 Ligands: ATP.16 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:T.30, K:T.30, K:K.51, K:T.90 K.21: 4 residues within 4Å: Chain M: T.30, K.51, T.90 Ligands: ATP.19 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:T.30, M:T.30, M:K.51, M:T.90 K.24: 4 residues within 4Å: Chain O: T.30, K.51, T.90 Ligands: ATP.22 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:T.30, O:T.30, O:K.51, O:T.90 K.27: 4 residues within 4Å: Chain Q: T.30, K.51, T.90 Ligands: ATP.25 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:T.30, Q:T.30, Q:K.51, Q:T.90 K.30: 4 residues within 4Å: Chain S: T.30, K.51, T.90 Ligands: ATP.28 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:T.30, S:T.30, S:K.51, S:T.90 K.33: 4 residues within 4Å: Chain U: T.30, K.51, T.90 Ligands: ATP.31 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:T.30, U:T.30, U:K.51, U:T.90 K.36: 4 residues within 4Å: Chain W: T.30, K.51, T.90 Ligands: ATP.34 4 PLIP interactions: 4 interactions with chain W Metal complexes: W:T.30, W:T.30, W:K.51, W:T.90 K.39: 4 residues within 4Å: Chain Y: T.30, K.51, T.90 Ligands: ATP.37 4 PLIP interactions: 4 interactions with chain Y Metal complexes: Y:T.30, Y:T.30, Y:K.51, Y:T.90 K.42: 4 residues within 4Å: Chain 0: T.30, K.51, T.90 Ligands: ATP.40 4 PLIP interactions: 4 interactions with chain 0 Metal complexes: 0:T.30, 0:T.30, 0:K.51, 0:T.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tascon, I. et al., Structural basis for ATP-triggered assembly of human mitochondrial Hsp60-Hsp10 chaperonin. To Be Published

Release Date

2025-04-09

Peptides

60 kDa heat shock protein, mitochondrial: ACEGIKMOQSUWY0
10 kDa heat shock protein, mitochondrial: BDFHJLNPRTVXZ1

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

G
D

I
E

K
F

M
G

O
H

Q
I

S
J

U
K

W
L

Y
M

0
N

B
a

D
b

F
c

H
d

J
e

L
f

N
g

P
h

R
i

T
j

V
k

X
l

Z
m

1
n

60 kDa heat shock protein, mitochondrial

10 kDa heat shock protein, mitochondrial

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