SMTL ID : 9es1.1

ATP-bound human mitochondrial Hsp60-Hsp10 half football complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-7-7-mer

Ligands

7 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 26 residues within 4Å: Chain A: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.2, K.3 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.32, A:G.53, A:G.88, A:G.88, A:T.89, A:T.89, A:T.90, A:T.90, A:T.91, A:T.91, A:G.416, A:G.417, A:D.480, A:D.480, A:A.481, A:M.482, A:D.496 Water bridges: A:K.51, A:D.496 Salt bridges: A:K.51 ATP.4: 26 residues within 4Å: Chain C: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.5, K.6 18 PLIP interactions: 18 interactions with chain C Hydrogen bonds: C:G.32, C:G.53, C:G.88, C:G.88, C:T.89, C:T.89, C:T.90, C:T.90, C:T.91, C:T.91, C:G.416, C:G.417, C:D.480, C:D.480, C:A.481, C:M.482, C:D.496 Salt bridges: C:K.51 ATP.7: 26 residues within 4Å: Chain E: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.8, K.9 19 PLIP interactions: 19 interactions with chain E Hydrogen bonds: E:G.32, E:G.53, E:G.88, E:T.89, E:T.89, E:T.90, E:T.90, E:T.91, E:T.91, E:D.399, E:G.416, E:G.417, E:D.480, E:D.480, E:A.481, E:M.482, E:D.496 Water bridges: E:K.51 Salt bridges: E:K.51 ATP.10: 26 residues within 4Å: Chain G: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.11, K.12 18 PLIP interactions: 18 interactions with chain G Hydrogen bonds: G:G.32, G:G.53, G:G.88, G:T.89, G:T.89, G:T.90, G:T.90, G:T.91, G:T.91, G:D.399, G:G.416, G:G.417, G:D.480, G:D.480, G:A.481, G:D.496 Water bridges: G:K.51 Salt bridges: G:K.51 ATP.13: 26 residues within 4Å: Chain I: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.14, K.15 20 PLIP interactions: 20 interactions with chain I Hydrogen bonds: I:G.32, I:G.53, I:G.88, I:T.89, I:T.89, I:T.90, I:T.90, I:T.91, I:T.91, I:D.399, I:G.416, I:G.417, I:D.480, I:D.480, I:A.481, I:M.482, I:D.496 Water bridges: I:S.151, I:N.153 Salt bridges: I:K.51 ATP.16: 25 residues within 4Å: Chain K: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, I.494, D.496 Ligands: MG.17, K.18 19 PLIP interactions: 19 interactions with chain K Hydrogen bonds: K:G.32, K:D.52, K:G.53, K:G.88, K:T.89, K:T.89, K:T.90, K:T.90, K:T.91, K:T.91, K:G.416, K:G.417, K:D.480, K:D.480, K:A.481, K:D.496 Water bridges: K:K.51, K:S.151 Salt bridges: K:K.51 ATP.19: 26 residues within 4Å: Chain M: T.30, M.31, G.32, P.33, K.51, D.52, G.53, D.87, G.88, T.89, T.90, T.91, I.150, D.399, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: MG.20, K.21 20 PLIP interactions: 20 interactions with chain M Hydrogen bonds: M:G.32, M:G.53, M:G.88, M:T.89, M:T.89, M:T.90, M:T.90, M:T.91, M:T.91, M:D.399, M:G.416, M:G.417, M:D.480, M:D.480, M:A.481, M:M.482, M:D.496 Water bridges: M:S.151, M:N.153 Salt bridges: M:K.51

7 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.87, S.151 Ligands: ATP.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.87, A:D.87, H2O.2 MG.5: 3 residues within 4Å: Chain C: D.87, S.151 Ligands: ATP.4 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.87, C:D.87, H2O.17 MG.8: 3 residues within 4Å: Chain E: D.87, S.151 Ligands: ATP.7 3 PLIP interactions: 2 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:D.87, E:D.87, H2O.32 MG.11: 3 residues within 4Å: Chain G: D.87, S.151 Ligands: ATP.10 3 PLIP interactions: 2 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:D.87, G:D.87, H2O.46 MG.14: 3 residues within 4Å: Chain I: D.87, S.151 Ligands: ATP.13 3 PLIP interactions: 2 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:D.87, I:D.87, H2O.60 MG.17: 3 residues within 4Å: Chain K: D.87, S.151 Ligands: ATP.16 3 PLIP interactions: 2 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:D.87, K:D.87, H2O.75 MG.20: 3 residues within 4Å: Chain M: D.87, S.151 Ligands: ATP.19 3 PLIP interactions: 2 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:D.87, M:D.87, H2O.89

7 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: T.30, K.51, T.90 Ligands: ATP.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:T.30, A:T.30, A:K.51 K.6: 4 residues within 4Å: Chain C: T.30, K.51, T.90 Ligands: ATP.4 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:T.30, C:T.30, C:K.51 K.9: 4 residues within 4Å: Chain E: T.30, K.51, T.90 Ligands: ATP.7 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:T.30, E:T.30, E:K.51 K.12: 4 residues within 4Å: Chain G: T.30, K.51, T.90 Ligands: ATP.10 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:T.30, G:T.30, G:K.51 K.15: 4 residues within 4Å: Chain I: T.30, K.51, T.90 Ligands: ATP.13 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:T.30, I:T.30, I:K.51 K.18: 4 residues within 4Å: Chain K: T.30, K.51, T.90 Ligands: ATP.16 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:T.30, K:T.30, K:K.51 K.21: 4 residues within 4Å: Chain M: T.30, K.51, T.90 Ligands: ATP.19 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:T.30, M:T.30, M:K.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tascon, I. et al., Structural basis for ATP-triggered assembly of human mitochondrial Hsp60-Hsp10 chaperonin. To Be Published

Release Date

2025-04-09

Peptides

60 kDa heat shock protein, mitochondrial: ACEGIKM
10 kDa heat shock protein, mitochondrial: BDFHJLN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

G
D

I
E

K
F

M
G

B
a

D
b

F
c

H
d

J
e

L
f

N
g

60 kDa heat shock protein, mitochondrial

10 kDa heat shock protein, mitochondrial

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