SMTL ID : 9es4.1

ADP:BeF3-bound human mitochondrial Hsp60-Hsp10 football complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-14-14-mer

Ligands

14 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 24 residues within 4Å: Chain A: T.30, M.31, G.32, P.33, K.51, D.87, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.2, MG.3, K.4 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.32, A:G.88, A:G.88, A:T.89, A:T.90, A:T.90, A:T.91, A:G.416, A:G.417, A:D.480, A:A.481, A:M.482, A:D.496 Salt bridges: A:K.51 ADP.5: 24 residues within 4Å: Chain C: T.30, M.31, G.32, P.33, K.51, D.87, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.6, MG.7, K.8 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:G.32, C:G.88, C:G.88, C:T.89, C:T.90, C:T.90, C:T.91, C:G.416, C:G.417, C:D.480, C:A.481, C:M.482, C:D.496 Salt bridges: C:K.51 ADP.9: 23 residues within 4Å: Chain E: T.30, M.31, G.32, P.33, K.51, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.10, MG.11, K.12 14 PLIP interactions: 14 interactions with chain E Hydrogen bonds: E:G.32, E:G.88, E:G.88, E:T.89, E:T.90, E:T.90, E:T.91, E:G.416, E:G.417, E:D.480, E:A.481, E:M.482, E:D.496 Salt bridges: E:K.51 ADP.13: 24 residues within 4Å: Chain G: T.30, M.31, G.32, P.33, K.51, D.87, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.14, MG.15, K.16 15 PLIP interactions: 15 interactions with chain G Hydrogen bonds: G:G.32, G:D.87, G:G.88, G:G.88, G:T.89, G:T.90, G:T.90, G:T.91, G:G.416, G:G.417, G:D.480, G:A.481, G:M.482, G:D.496 Salt bridges: G:K.51 ADP.17: 24 residues within 4Å: Chain I: T.30, M.31, G.32, P.33, K.51, D.87, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.18, MG.19, K.20 14 PLIP interactions: 14 interactions with chain I Hydrogen bonds: I:G.32, I:G.88, I:G.88, I:T.89, I:T.90, I:T.90, I:T.91, I:G.416, I:G.417, I:D.480, I:A.481, I:M.482, I:D.496 Salt bridges: I:K.51 ADP.21: 24 residues within 4Å: Chain K: T.30, M.31, G.32, P.33, K.51, D.87, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.22, MG.23, K.24 15 PLIP interactions: 15 interactions with chain K Hydrogen bonds: K:G.32, K:D.87, K:G.88, K:G.88, K:T.89, K:T.90, K:T.90, K:T.91, K:G.416, K:G.417, K:D.480, K:A.481, K:M.482, K:D.496 Salt bridges: K:K.51 ADP.25: 23 residues within 4Å: Chain M: T.30, M.31, G.32, P.33, K.51, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.26, MG.27, K.28 14 PLIP interactions: 14 interactions with chain M Hydrogen bonds: M:G.32, M:G.88, M:G.88, M:T.89, M:T.90, M:T.90, M:T.91, M:G.416, M:G.417, M:D.480, M:A.481, M:M.482, M:D.496 Salt bridges: M:K.51 ADP.29: 24 residues within 4Å: Chain O: T.30, M.31, G.32, P.33, K.51, D.87, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.30, MG.31, K.32 16 PLIP interactions: 16 interactions with chain O Hydrogen bonds: O:G.32, O:D.87, O:G.88, O:G.88, O:T.89, O:T.89, O:T.90, O:T.91, O:T.91, O:G.416, O:G.417, O:D.480, O:A.481, O:M.482, O:D.496 Salt bridges: O:K.51 ADP.33: 24 residues within 4Å: Chain Q: T.30, M.31, G.32, P.33, K.51, D.87, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.34, MG.35, K.36 14 PLIP interactions: 14 interactions with chain Q Hydrogen bonds: Q:G.32, Q:G.88, Q:G.88, Q:T.89, Q:T.90, Q:T.91, Q:T.91, Q:G.416, Q:G.417, Q:D.480, Q:A.481, Q:M.482, Q:D.496 Salt bridges: Q:K.51 ADP.37: 23 residues within 4Å: Chain S: T.30, M.31, G.32, P.33, K.51, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.38, MG.39, K.40 15 PLIP interactions: 15 interactions with chain S Hydrogen bonds: S:G.32, S:G.88, S:G.88, S:T.89, S:T.89, S:T.90, S:T.91, S:T.91, S:G.416, S:G.417, S:D.480, S:A.481, S:M.482, S:D.496 Salt bridges: S:K.51 ADP.41: 24 residues within 4Å: Chain U: T.30, M.31, G.32, P.33, K.51, D.87, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.42, MG.43, K.44 15 PLIP interactions: 15 interactions with chain U Hydrogen bonds: U:G.32, U:D.87, U:G.88, U:G.88, U:T.89, U:T.90, U:T.91, U:T.91, U:G.416, U:G.417, U:D.480, U:A.481, U:M.482, U:D.496 Salt bridges: U:K.51 ADP.45: 24 residues within 4Å: Chain W: T.30, M.31, G.32, P.33, K.51, D.87, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.46, MG.47, K.48 15 PLIP interactions: 15 interactions with chain W Hydrogen bonds: W:G.32, W:D.87, W:G.88, W:G.88, W:T.89, W:T.90, W:T.91, W:T.91, W:G.416, W:G.417, W:D.480, W:A.481, W:M.482, W:D.496 Salt bridges: W:K.51 ADP.49: 24 residues within 4Å: Chain Y: T.30, M.31, G.32, P.33, K.51, D.87, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.50, MG.51, K.52 14 PLIP interactions: 14 interactions with chain Y Hydrogen bonds: Y:G.32, Y:G.88, Y:G.88, Y:T.89, Y:T.90, Y:T.91, Y:T.91, Y:G.416, Y:G.417, Y:D.480, Y:A.481, Y:M.482, Y:D.496 Salt bridges: Y:K.51 ADP.53: 23 residues within 4Å: Chain 0: T.30, M.31, G.32, P.33, K.51, G.88, T.89, T.90, T.91, I.150, G.415, G.416, G.417, I.455, Y.479, D.480, A.481, M.482, I.494, D.496 Ligands: BEF.54, MG.55, K.56 14 PLIP interactions: 14 interactions with chain 0 Hydrogen bonds: 0:G.32, 0:G.88, 0:G.88, 0:T.89, 0:T.90, 0:T.91, 0:T.91, 0:G.416, 0:G.417, 0:D.480, 0:A.481, 0:M.482, 0:D.496 Salt bridges: 0:K.51

14 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 10 residues within 4Å: Chain A: D.52, G.53, D.87, G.88, T.89, T.90, D.399 Ligands: ADP.1, MG.3, K.4 No protein-ligand interaction detected (PLIP) BEF.6: 10 residues within 4Å: Chain C: D.52, G.53, D.87, G.88, T.89, T.90, D.399 Ligands: ADP.5, MG.7, K.8 No protein-ligand interaction detected (PLIP) BEF.10: 10 residues within 4Å: Chain E: D.52, G.53, D.87, G.88, T.89, T.90, D.399 Ligands: ADP.9, MG.11, K.12 No protein-ligand interaction detected (PLIP) BEF.14: 10 residues within 4Å: Chain G: K.51, D.52, G.53, D.87, T.89, T.90, D.399 Ligands: ADP.13, MG.15, K.16 No protein-ligand interaction detected (PLIP) BEF.18: 10 residues within 4Å: Chain I: D.52, G.53, D.87, G.88, T.89, T.90, D.399 Ligands: ADP.17, MG.19, K.20 No protein-ligand interaction detected (PLIP) BEF.22: 10 residues within 4Å: Chain K: D.52, G.53, D.87, G.88, T.89, T.90, D.399 Ligands: ADP.21, MG.23, K.24 No protein-ligand interaction detected (PLIP) BEF.26: 10 residues within 4Å: Chain M: D.52, G.53, D.87, G.88, T.89, T.90, D.399 Ligands: ADP.25, MG.27, K.28 No protein-ligand interaction detected (PLIP) BEF.30: 10 residues within 4Å: Chain O: D.52, G.53, D.87, G.88, T.89, T.90, D.399 Ligands: ADP.29, MG.31, K.32 No protein-ligand interaction detected (PLIP) BEF.34: 10 residues within 4Å: Chain Q: D.52, G.53, D.87, G.88, T.89, T.90, D.399 Ligands: ADP.33, MG.35, K.36 No protein-ligand interaction detected (PLIP) BEF.38: 10 residues within 4Å: Chain S: D.52, G.53, D.87, G.88, T.89, T.90, D.399 Ligands: ADP.37, MG.39, K.40 No protein-ligand interaction detected (PLIP) BEF.42: 10 residues within 4Å: Chain U: K.51, D.52, G.53, D.87, T.89, T.90, D.399 Ligands: ADP.41, MG.43, K.44 No protein-ligand interaction detected (PLIP) BEF.46: 10 residues within 4Å: Chain W: D.52, G.53, D.87, G.88, T.89, T.90, D.399 Ligands: ADP.45, MG.47, K.48 No protein-ligand interaction detected (PLIP) BEF.50: 10 residues within 4Å: Chain Y: D.52, G.53, D.87, G.88, T.89, T.90, D.399 Ligands: ADP.49, MG.51, K.52 No protein-ligand interaction detected (PLIP) BEF.54: 10 residues within 4Å: Chain 0: D.52, G.53, D.87, G.88, T.89, T.90, D.399 Ligands: ADP.53, MG.55, K.56 No protein-ligand interaction detected (PLIP)

14 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.87, S.151 Ligands: ADP.1, BEF.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.87, A:D.87 MG.7: 4 residues within 4Å: Chain C: D.87, S.151 Ligands: ADP.5, BEF.6 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.87, C:D.87 MG.11: 4 residues within 4Å: Chain E: D.87, S.151 Ligands: ADP.9, BEF.10 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:D.87, E:D.87 MG.15: 4 residues within 4Å: Chain G: D.87, S.151 Ligands: ADP.13, BEF.14 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:D.87, G:D.87 MG.19: 4 residues within 4Å: Chain I: D.87, S.151 Ligands: ADP.17, BEF.18 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:D.87, I:D.87 MG.23: 4 residues within 4Å: Chain K: D.87, S.151 Ligands: ADP.21, BEF.22 2 PLIP interactions: 2 interactions with chain K Metal complexes: K:D.87, K:D.87 MG.27: 4 residues within 4Å: Chain M: D.87, S.151 Ligands: ADP.25, BEF.26 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:D.87, M:D.87 MG.31: 4 residues within 4Å: Chain O: D.87, S.151 Ligands: ADP.29, BEF.30 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:D.87, O:D.87 MG.35: 4 residues within 4Å: Chain Q: D.87, S.151 Ligands: ADP.33, BEF.34 2 PLIP interactions: 2 interactions with chain Q Metal complexes: Q:D.87, Q:D.87 MG.39: 4 residues within 4Å: Chain S: D.87, S.151 Ligands: ADP.37, BEF.38 2 PLIP interactions: 2 interactions with chain S Metal complexes: S:D.87, S:D.87 MG.43: 4 residues within 4Å: Chain U: D.87, S.151 Ligands: ADP.41, BEF.42 2 PLIP interactions: 2 interactions with chain U Metal complexes: U:D.87, U:D.87 MG.47: 4 residues within 4Å: Chain W: D.87, S.151 Ligands: ADP.45, BEF.46 2 PLIP interactions: 2 interactions with chain W Metal complexes: W:D.87, W:D.87 MG.51: 4 residues within 4Å: Chain Y: D.87, S.151 Ligands: ADP.49, BEF.50 2 PLIP interactions: 2 interactions with chain Y Metal complexes: Y:D.87, Y:D.87 MG.55: 4 residues within 4Å: Chain 0: D.87, S.151 Ligands: ADP.53, BEF.54 2 PLIP interactions: 2 interactions with chain 0 Metal complexes: 0:D.87, 0:D.87

14 x K: POTASSIUM ION(Non-covalent)

K.4: 6 residues within 4Å: Chain A: T.30, K.51, G.53, T.90 Ligands: ADP.1, BEF.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:T.30, A:T.30, A:K.51, A:T.90 K.8: 5 residues within 4Å: Chain C: T.30, K.51, T.90 Ligands: ADP.5, BEF.6 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:T.30, C:T.30, C:K.51, C:T.90 K.12: 5 residues within 4Å: Chain E: T.30, K.51, T.90 Ligands: ADP.9, BEF.10 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:T.30, E:T.30, E:K.51, E:T.90 K.16: 6 residues within 4Å: Chain G: T.30, K.51, G.53, T.90 Ligands: ADP.13, BEF.14 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:T.30, G:T.30, G:K.51, G:T.90 K.20: 5 residues within 4Å: Chain I: T.30, K.51, T.90 Ligands: ADP.17, BEF.18 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:T.30, I:T.30, I:K.51, I:T.90 K.24: 6 residues within 4Å: Chain K: T.30, K.51, G.53, T.90 Ligands: ADP.21, BEF.22 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:T.30, K:T.30, K:K.51, K:T.90 K.28: 6 residues within 4Å: Chain M: T.30, K.51, G.53, T.90 Ligands: ADP.25, BEF.26 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:T.30, M:T.30, M:K.51, M:T.90 K.32: 6 residues within 4Å: Chain O: T.30, K.51, G.53, T.90 Ligands: ADP.29, BEF.30 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:T.30, O:T.30, O:K.51, O:T.90 K.36: 5 residues within 4Å: Chain Q: T.30, K.51, T.90 Ligands: ADP.33, BEF.34 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:T.30, Q:T.30, Q:K.51, Q:T.90 K.40: 5 residues within 4Å: Chain S: T.30, K.51, T.90 Ligands: ADP.37, BEF.38 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:T.30, S:T.30, S:K.51, S:T.90 K.44: 6 residues within 4Å: Chain U: T.30, K.51, G.53, T.90 Ligands: ADP.41, BEF.42 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:T.30, U:T.30, U:K.51, U:T.90 K.48: 5 residues within 4Å: Chain W: T.30, K.51, T.90 Ligands: ADP.45, BEF.46 4 PLIP interactions: 4 interactions with chain W Metal complexes: W:T.30, W:T.30, W:K.51, W:T.90 K.52: 6 residues within 4Å: Chain Y: T.30, K.51, G.53, T.90 Ligands: ADP.49, BEF.50 4 PLIP interactions: 4 interactions with chain Y Metal complexes: Y:T.30, Y:T.30, Y:K.51, Y:T.90 K.56: 6 residues within 4Å: Chain 0: T.30, K.51, G.53, T.90 Ligands: ADP.53, BEF.54 4 PLIP interactions: 4 interactions with chain 0 Metal complexes: 0:T.30, 0:T.30, 0:K.51, 0:T.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tascon, I. et al., Structural basis for ATP-triggered assembly of human mitochondrial Hsp60-Hsp10 chaperonin. To Be Published

Release Date

2025-04-09

Peptides

60 kDa heat shock protein, mitochondrial: ACEGIKMOQSUWY0
10 kDa heat shock protein, mitochondrial: BDFHJLNPRTVXZ1

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
C

G
D

I
E

K
F

M
G

O
H

Q
I

S
J

U
K

W
L

Y
M

0
N

B
a

D
b

F
c

H
d

J
e

L
f

N
g

P
h

R
i

T
j

V
k

X
l

Z
m

1
n

60 kDa heat shock protein, mitochondrial

10 kDa heat shock protein, mitochondrial

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