SMTL ID : 9fhd.1

hKHK-C in fomplex with BI-9787

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

3 x SO4: SULFATE ION

SO4.1: 10 residues within 4Å: Chain A: R.123, I.125, T.268, L.269, G.270, A.271, G.272, D.273 Chain B: E.44 Ligands: 01.2 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.270, A:A.271, A:G.272, A:D.273, B:E.44 Water bridges: A:N.57, A:N.60, B:E.44 Salt bridges: A:R.123 SO4.3: 6 residues within 4Å: Chain B: R.93, R.94, Q.307, G.308, F.309, D.310 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:F.309, B:D.310 Water bridges: B:R.94 Salt bridges: B:R.93, B:R.94 SO4.4: 7 residues within 4Å: Chain A: R.46 Chain B: L.26, L.127, H.128, R.156, K.189, R.191 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Salt bridges: B:H.128, B:R.156, B:K.189, B:R.191, A:R.46

2 x 01: (2~{S})-3-[3-[[4-[bis(fluoranyl)methyl]-3-cyano-6-[(3~{S})-3-(dimethylamino)pyrrolidin-1-yl]pyridin-2-yl]amino]-4-methylsulfanyl-phenyl]-2-methyl-propanoic acid

01.2: 26 residues within 4Å: Chain A: N.120, G.121, N.122, R.123, K.208, A.239, W.240, A.241, E.242, G.244, A.245, A.259, F.260, P.261, P.262, V.265, T.268, A.271, G.272, F.275, C.297, A.300, G.301, C.304 Chain B: D.42 Ligands: SO4.1 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.239, A:T.268, A:A.271, A:F.275 Hydrogen bonds: A:A.241 Water bridges: A:K.208, A:G.301 Salt bridges: A:K.208, B:D.42 01.5: 21 residues within 4Å: Chain B: S.207, K.208, A.239, W.240, A.241, E.242, G.244, A.245, A.259, F.260, P.261, P.262, V.265, T.268, A.271, G.272, F.275, C.297, A.300, G.301, C.304 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:A.239, B:A.271, B:F.275 Hydrogen bonds: B:A.241 Water bridges: B:K.208, B:F.260, B:T.268, B:T.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heine, N. et al., Discovery of BI-9787, a potent zwitterionic ketohexokinase inhibitor with oral bioavailability. Bioorg.Med.Chem.Lett. (2024)

Release Date

2024-09-04

Peptides

Ketohexokinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ketohexokinase

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