SMTL ID : 9fl8.1

Stapled peptide bound to NOT9-NOT1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

hetero-2-2-2-mer

Ligands

6 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.1: 5 residues within 4Å: Chain B: N.5, L.8 Chain C: R.34, N.80, Y.122 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:R.34, C:N.80, B:N.5 BU1.2: 8 residues within 4Å: Chain B: L.9, H.12, L.16 Chain C: A.83, Q.86, T.126, G.129, V.130 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:Q.86, C:V.130 Hydrogen bonds: C:Q.86 BU1.3: 6 residues within 4Å: Chain C: P.92, E.93, T.94, R.95, S.96 Chain F: E.184 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.93, C:R.95, C:R.95, C:S.96 BU1.4: 3 residues within 4Å: Chain D: G.193, R.194, R.195 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.195 BU1.5: 4 residues within 4Å: Chain D: L.118, S.122, A.149, Q.153 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:L.118 Hydrogen bonds: D:S.122, D:A.149 BU1.6: 6 residues within 4Å: Chain A: F.6 Chain E: E.121, L.125, S.163, E.164, L.165 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:L.165 Hydrogen bonds: E:S.163, E:E.164, E:L.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pal, S. et al., Stapled Peptides as Inhibitors of mRNA Deadenylation. Angew.Chem.Int.Ed.Engl. (2025)

Release Date

2025-01-29

Peptides

Protein bag of marbles: AB
CCR4-NOT transcription complex subunit 9: CE
CCR4-NOT transcription complex subunit 1: DF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
F

C
B

E
C

D
A

F
D

Protein bag of marbles

CCR4-NOT transcription complex subunit 9

CCR4-NOT transcription complex subunit 1

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