SMTL ID : 9fpz.1

Human NatA-MAP2 80S ribosome complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain C: D.268, H.337, E.370, E.465 Ligands: CO.2 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.268, C:H.337, C:E.370, C:E.465 CO.2: 6 residues within 4Å: Chain C: D.257, D.268, H.337, E.370, E.465 Ligands: CO.1 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.268, C:E.370, C:E.465, C:E.465

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.3: 7 residues within 4Å: Chain D: R.330, K.416, K.419, H.420, K.447, K.450, K.454 15 PLIP interactions: 15 interactions with chain D Hydrogen bonds: D:R.330 Salt bridges: D:K.416, D:K.416, D:K.416, D:K.419, D:K.419, D:H.420, D:K.447, D:K.447, D:K.450, D:K.450, D:K.450, D:K.454, D:K.454, D:K.556

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klein, M. et al., Multi-protein assemblies orchestrate co-translational enzymatic processing on the human ribosome. Nat Commun (2024)

Release Date

2024-07-03

Peptides

N-alpha-acetyltransferase 10: A
Methionine aminopeptidase 2: C
N-alpha-acetyltransferase 15, NatA auxiliary subunit: D
60S ribosomal protein L4: F
Large ribosomal subunit protein eL6: G
60S ribosomal protein L38: H
Large ribosomal subunit protein uL24: I
60S ribosomal protein L35: J
60S ribosomal protein L23a: K
60S ribosomal protein L19: L
60S ribosomal protein L28: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
2

C
A

D
B

F
LC

G
LE

H
Lk

I
LY

J
Lh

K
LX

L
LR

M
Lr

N-alpha-acetyltransferase 10

Methionine aminopeptidase 2

N-alpha-acetyltransferase 15, NatA auxiliary subunit

60S ribosomal protein L4

Large ribosomal subunit protein eL6

60S ribosomal protein L38

Large ribosomal subunit protein uL24

60S ribosomal protein L35

60S ribosomal protein L23a

60S ribosomal protein L19

60S ribosomal protein L28

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