SMTL ID : 9g07.1

The structure of Candida albicans phosphoglucose isomerase in complex with a fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

2 x 01: 4-bromanyl-2-methyl-pyrazol-3-amine

01.1: 10 residues within 4Å: Chain A: S.333, L.361, L.364, S.365, T.386, L.388, Y.495, L.498, T.499, E.502 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.502 pi-Stacking: A:H.345 01.3: 10 residues within 4Å: Chain B: S.333, L.361, L.364, S.365, T.386, L.388, Y.495, L.498, T.499, E.502 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.502 pi-Stacking: B:H.345

2 x PA5: 5-PHOSPHOARABINONIC ACID(Non-covalent)

PA5.2: 13 residues within 4Å: Chain A: I.166, G.167, G.168, S.169, S.219, K.220, T.221, T.224, Q.363, E.367, V.516, K.520 Chain B: H.398 18 PLIP interactions: 16 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.168, A:S.169, A:S.169, A:K.220, A:T.221, A:T.224, A:Q.363, A:K.520, B:H.398, B:H.398 Water bridges: A:I.166, A:S.169, A:T.221, A:G.281, A:G.281, A:R.282, A:K.520 Salt bridges: A:K.520 PA5.4: 13 residues within 4Å: Chain A: H.398 Chain B: I.166, G.167, G.168, S.169, S.219, K.220, T.221, T.224, Q.363, E.367, V.516, K.520 17 PLIP interactions: 15 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.168, B:S.169, B:S.169, B:K.220, B:T.221, B:T.224, B:Q.363, B:K.520, A:H.398, A:H.398 Water bridges: B:I.166, B:T.227, B:G.281, B:G.281, B:Q.513, B:K.520 Salt bridges: B:K.520

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, K. et al., Using a fragment-based approach to explore starting points for chemical validation of antimicrobial targets. To Be Published

Release Date

2025-07-16

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glucose-6-phosphate isomerase

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