SMTL ID : 9g45.1

The structure of Candida albicans phosphoglucose isomerase in complex with a fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x PA5: 5-PHOSPHOARABINONIC ACID(Non-covalent)

PA5.1: 13 residues within 4Å: Chain A: I.166, G.167, G.168, S.169, S.219, K.220, T.221, T.224, Q.363, E.367, V.516, K.520 Chain B: H.398 20 PLIP interactions: 18 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.168, A:S.169, A:S.169, A:K.220, A:T.221, A:T.224, A:Q.363, B:H.398, B:H.398 Water bridges: A:I.166, A:S.169, A:G.281, A:G.281, A:R.282, A:Q.513, A:K.520, A:K.520, A:K.520, A:K.520 Salt bridges: A:K.520 PA5.5: 14 residues within 4Å: Chain A: H.398 Chain B: I.166, G.167, G.168, S.169, S.219, K.220, T.221, T.224, Q.363, E.367, Q.513, V.516, K.520 19 PLIP interactions: 18 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.168, B:S.169, B:S.169, B:S.169, B:K.220, B:T.221, B:T.224, B:T.224, B:Q.363, A:H.398 Water bridges: B:G.281, B:G.281, B:R.282, B:Q.513, B:K.520, B:K.520, B:K.520, B:K.520 Salt bridges: B:K.520

2 x 01: 2-[(dimethylamino)methyl]pyridin-3-ol

01.2: 6 residues within 4Å: Chain A: R.115, D.132, L.135, K.136, K.139, F.299 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.135, A:K.136, A:F.299 Water bridges: A:R.115, A:R.115, A:R.115, A:D.132 Salt bridges: A:D.132 01.4: 7 residues within 4Å: Chain B: R.115, D.132, L.135, K.136, K.139, F.299 Ligands: CL.6 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:K.136, B:F.299 Water bridges: B:R.115, B:R.115, B:R.115, B:D.132 Salt bridges: B:D.132

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: R.115, N.303 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: R.115, N.303 Ligands: 01.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, K. et al., Exploration of starting points for the chemical validation of UDP-N-acetylglucosamine pyrophosphorylase in Aspergillus fumigatus. To Be Published

Release Date

2025-07-23

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucose-6-phosphate isomerase

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