SMTL ID : 9g46.1

The structure of Candida albicans phosphoglucose isomerae (CaPGI) in complex with fragments

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

homo-dimer

Ligands

2 x PA5: 5-PHOSPHOARABINONIC ACID(Non-covalent)

PA5.1: 13 residues within 4Å: Chain A: I.166, G.167, G.168, S.169, S.219, K.220, T.221, T.224, Q.363, E.367, V.516, K.520 Chain B: H.398 20 PLIP interactions: 18 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.168, A:S.169, A:S.169, A:K.220, A:T.221, A:T.224, A:Q.363, B:H.398, B:H.398 Water bridges: A:I.166, A:S.169, A:G.281, A:G.281, A:R.282, A:Q.513, A:K.520, A:K.520, A:K.520, A:K.520 Salt bridges: A:K.520 PA5.6: 14 residues within 4Å: Chain A: H.398 Chain B: I.166, G.167, G.168, S.169, S.219, K.220, T.221, T.224, G.281, Q.363, E.367, Q.513, V.516 15 PLIP interactions: 1 interactions with chain A, 14 interactions with chain B Hydrogen bonds: A:H.398, B:G.168, B:S.169, B:S.169, B:K.220, B:T.221, B:T.224, B:T.224, B:Q.363, B:E.367 Water bridges: B:T.221, B:G.281, B:G.281, B:G.281, B:Q.513

2 x 01: (1S)-3-(methylamino)-1-thiophen-2-yl-propan-1-ol

01.2: 8 residues within 4Å: Chain A: V.134, H.137, A.269, M.272, G.274, F.275, E.276 Ligands: CL.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.134 Hydrogen bonds: A:A.269 01.7: 9 residues within 4Å: Chain B: V.134, H.137, A.269, K.270, M.272, G.274, F.275, E.276 Ligands: CL.8 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.134 Hydrogen bonds: B:A.269

2 x 02: [4-(hydroxymethyl)cyclohexyl]methanol

02.3: 5 residues within 4Å: Chain A: E.426 Chain B: T.201, A.202, S.233, W.237 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:E.426, A:E.426 Hydrophobic interactions: B:T.201 Water bridges: B:L.205, B:K.206 02.5: 5 residues within 4Å: Chain A: T.201, A.202, S.233, W.237 Chain B: E.426 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:T.201 Hydrogen bonds: B:E.426, B:E.426

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 6 residues within 4Å: Chain A: V.134, H.137, M.272, F.273, G.274 Ligands: 01.2 Ligand excluded by PLIP CL.8: 6 residues within 4Å: Chain B: V.134, H.137, M.272, F.273, G.274 Ligands: 01.7 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, K. et al., Exploration of starting points for the chemical validation of UDP-N-acetylglucosamine pyrophosphorylase in Aspergillus fumigatus. To Be Published

Release Date

2025-07-23

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucose-6-phosphate isomerase

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