SMTL ID : 9g4m.1

Crystal structure of monoacylglycerol lipase with BODIPY labeled probe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

monomer

Ligands

1 x 01: 3-[2,2-bis(fluoranyl)-10,12-dimethyl-1$l^{4},3-diaza-2$l^{4}-boratricyclo[7.3.0.0^{3,7}]dodeca-1(12),4,6,8,10-pentaen-4-yl]-~{N}-[2-[2-[[2-[(6-oxidanylidene-7-oxa-2,5-diazaspiro[3.4]octan-2-yl)carbonyl]-2-azaspiro[3.3]heptan-6-yl]methyl]phenoxy]ethyl]propanamide

01.1: 24 residues within 4Å: Chain A: G.70, A.71, E.73, R.77, H.141, S.142, M.143, A.171, N.172, E.174, S.175, F.179, P.198, I.199, D.200, Y.214, L.225, G.230, L.233, R.260, L.261, C.262, H.289, V.290 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:E.174, A:F.179, A:L.225, A:L.233, A:L.261 Hydrogen bonds: A:A.71, A:R.77, A:H.141, A:M.143, A:S.175, A:S.175, A:D.200

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: Q.32, G.101, R.107, P.218, L.219, I.220, C.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.32, A:G.101, A:R.107 EDO.3: 5 residues within 4Å: Chain A: S.257, D.259, C.262, D.263, S.264 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.259, A:D.259, A:S.264 Water bridges: A:D.263, A:D.263 EDO.4: 5 residues within 4Å: Chain A: P.198, I.199, D.200, S.201, N.215 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.200, A:S.201, A:S.201, A:N.215 EDO.5: 4 residues within 4Å: Chain A: Y.54, M.127, Y.131 Ligands: EDO.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.131 EDO.6: 6 residues within 4Å: Chain A: E.80, E.210, H.292, K.293, T.299, F.303 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.210, A:K.293 Water bridges: A:E.80, A:L.81 EDO.7: 3 residues within 4Å: Chain A: K.282, S.301, E.305 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.282, A:K.282, A:S.301, A:S.301 EDO.8: 3 residues within 4Å: Chain A: K.208, V.211, D.212 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.212 EDO.9: 6 residues within 4Å: Chain A: Y.54, H.123, S.126, M.127, D.130 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.126 Water bridges: A:H.41, A:Y.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hentsch, A. et al., A Highly Selective and Versatile Probe Platform for Visualization of Monoacylglycerol Lipase. Angew.Chem.Int.Ed.Engl. (2025)

Release Date

2025-06-11

Peptides

Monoglyceride lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Monoglyceride lipase

Related Entries With Identical Sequence