SMTL ID : 9gch.1

Human mitochondrial RNase Z with tRNA-His-CCA, SDR5C1/TRMT10C focus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 1.90 Å

Oligo State

hetero-4-1-mer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 21 residues within 4Å: Chain E: L.221, T.222, A.223, D.224, I.240, G.241, F.243, D.245, Q.249, G.251, T.252, S.253, C.266, L.267, L.269, K.280, N.281, L.282, L.284, M.287 Chain F: A.8 16 PLIP interactions: 16 interactions with chain E Hydrophobic interactions: E:N.281 Hydrogen bonds: E:T.222, E:G.241, E:Q.249, E:Q.249, E:G.251, E:T.252, E:S.253, E:S.253, E:L.267, E:K.280, E:L.282 Water bridges: E:A.223, E:N.281, E:N.281 Salt bridges: E:D.245

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-functional Binders)

GTP.2: 3 residues within 4Å: Chain F: U.1, C.67, C.68 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 6 residues within 4Å: Chain E: T.283, Q.286, R.310 Chain F: A.8, G.9, U.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valentin Gese, G. et al., Structural basis of 3'-tRNA maturation by the human mitochondrial RNase Z complex. Embo J. (2024)

Release Date

2024-11-20

Peptides

3-hydroxyacyl-CoA dehydrogenase type-2: ABCD
tRNA methyltransferase 10 homolog C: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
F

3-hydroxyacyl-CoA dehydrogenase type-2

tRNA methyltransferase 10 homolog C

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