SMTL ID : 9gew.1

Crystal structure of CREBBP bromodomain in complex with (R,E)-6-(5-(6-methoxy-2,3-dihydro-4H-benzo[b][1,4]oxazin-4-yl)pent-1-en-1-yl)-4-methyl-1,3,4,5-tetrahydro-2H-benzo[b][1,4]diazepin-2-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x 01: (4~{R})-6-[(~{E})-5-(6-methoxy-2,3-dihydro-1,4-benzoxazin-4-yl)pent-1-enyl]-4-methyl-1,3,4,5-tetrahydro-1,5-benzodiazepin-2-one

01.1: 13 residues within 4Å: Chain A: L.31, P.32, F.33, V.37, L.42, I.44, Y.47, Y.89, N.90, R.95, V.96, F.99 Ligands: BU3.4 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.32, A:P.32, A:F.33, A:V.37, A:L.42, A:L.42, A:I.44, A:Y.47, A:F.99 Hydrogen bonds: A:P.32, A:N.90, A:N.90

3 x BU3: (R,R)-2,3-BUTANEDIOL(Non-covalent)

BU3.2: 4 residues within 4Å: Chain A: K.63, Q.68, Q.70, Q.74 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Q.74 Hydrogen bonds: A:K.63, A:K.63 Water bridges: A:D.78, A:D.78 BU3.3: 2 residues within 4Å: Chain A: T.66, G.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.66 Water bridges: A:Q.68, A:Q.68 BU3.4: 4 residues within 4Å: Chain A: L.42, I.44, R.95 Ligands: 01.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Amann, M. et al., Crystal structure of CREBBP bromodomain in complex with (R,E)-6-(5-(6-methoxy-2,3-dihydro-4H-benzo[b][1,4]oxazin-4-yl)pent-1-en-1-yl)-4-methyl-1,3,4,5-tetrahydro-2H-benzo[b][1,4]diazepin-2-one. To Be Published

Release Date

2025-08-20

Peptides

CREBBP: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREBBP

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