SMTL ID : 9gfu.1

Human PPAR-gamma ligand binding domain in complex with AKGO172

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x 01: 4-[5-chloranyl-1-[2-chloranyl-6-(trifluoromethyl)phenyl]carbonyl-indazol-3-yl]-3-[(3-ethoxycarbonylphenyl)methoxy]benzoic acid

01.1: 25 residues within 4Å: Chain A: L.53, F.62, H.64, I.79, G.82, C.83, Q.84, R.86, S.87, H.121, I.124, Y.125, L.128, L.131, M.132, V.137, I.139, M.146, L.151, F.161, M.162, K.165, F.166, H.247, L.251 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.53, A:F.62, A:I.79, A:R.86, A:I.124, A:L.128, A:L.128, A:V.137, A:I.139, A:K.165 Hydrogen bonds: A:K.165 Salt bridges: A:H.64, A:R.86 pi-Cation interactions: A:H.247 01.2: 26 residues within 4Å: Chain B: L.53, I.79, F.80, G.82, C.83, Q.84, R.86, S.87, H.121, I.124, Y.125, L.128, L.131, M.132, V.137, I.139, M.146, L.151, F.161, M.162, K.165, F.166, H.247, L.251, L.267, Y.271 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.53, B:I.79, B:I.79, B:R.86, B:I.124, B:L.128, B:L.128, B:I.139, B:K.165, B:K.165 Hydrogen bonds: B:K.165 Salt bridges: B:R.86 pi-Cation interactions: B:H.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koops, A.A. et al., Development and characterization of novel indazole-based PPAR-gamma partial agonists. To Be Published

Release Date

2025-08-20

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Peroxisome proliferator-activated receptor gamma

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