SMTL ID : 9gno.1

Crystal structure of CDK2 bound by compound 4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.16 Å

Oligo State

monomer

Ligands

1 x 01: (2R)-2-[(9-isopropyl-6-{[(3S)-1-(methylsulfonyl)-3-pyrrolidinyl]amino}-9H-purin-2-yl)amino]-3-methyl-1-butanol

01.1: 18 residues within 4Å: Chain A: I.18, G.19, E.20, G.21, V.26, A.39, K.41, F.88, E.89, F.90, L.91, H.92, Q.93, D.94, K.97, Q.139, L.142, A.152 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.26, A:A.39, A:F.88, A:F.90, A:L.142, A:A.152 Hydrogen bonds: A:L.91, A:L.91, A:D.94, A:D.94, A:K.97 Water bridges: A:K.97, A:Q.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosh, A. et al., Discovery of AZD8421: A Potent CDK2 Inhibitor with Selectivity Against Other CDK Family Members and the Human Kinome. J.Med.Chem. (2025)

Release Date

2025-09-10

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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