SMTL ID : 9gpb.1

THE ALLOSTERIC TRANSITION OF GLYCOGEN PHOSPHORYLASE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-tetramer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.11, S.14, R.69 Chain B: R.43 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.14, A:R.69 Salt bridges: A:K.11, B:R.43 SO4.2: 5 residues within 4Å: Chain A: G.134, G.135, R.569, K.574 Ligands: PLP.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.135 Salt bridges: A:R.569, A:K.574 SO4.3: 4 residues within 4Å: Chain A: Y.155, R.242, R.310, S.314 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.314 Salt bridges: A:R.242, A:R.310 SO4.5: 4 residues within 4Å: Chain A: R.43 Chain B: S.14, V.15, R.69 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.43, B:R.69 Hydrogen bonds: B:V.15 SO4.6: 5 residues within 4Å: Chain B: G.134, G.135, R.569, K.574 Ligands: PLP.8 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.135 Salt bridges: B:R.569, B:K.574 SO4.7: 5 residues within 4Å: Chain B: Y.155, R.242, D.306, R.309, R.310 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:R.242, B:R.309, B:R.310 SO4.9: 5 residues within 4Å: Chain C: S.14, V.15, R.16, R.69 Chain D: R.43 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:V.15 Salt bridges: C:R.69, D:R.43 SO4.10: 4 residues within 4Å: Chain C: R.569, Y.573, K.574 Ligands: PLP.12 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:Y.573, C:Y.573 Salt bridges: C:R.569, C:K.574 SO4.11: 4 residues within 4Å: Chain C: Y.155, R.242, R.309, R.310 3 PLIP interactions: 3 interactions with chain C Salt bridges: C:R.242, C:R.309, C:R.310 SO4.13: 4 residues within 4Å: Chain C: R.43 Chain D: S.14, V.15, R.69 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:R.43, D:S.14, D:S.14, D:V.15 Salt bridges: D:R.69 SO4.14: 2 residues within 4Å: Chain D: G.135, K.574 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.135 Salt bridges: D:K.574 SO4.15: 4 residues within 4Å: Chain D: F.196, R.242, R.309, R.310 3 PLIP interactions: 3 interactions with chain D Salt bridges: D:R.242, D:R.309, D:R.310

4 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.4: 15 residues within 4Å: Chain A: Y.90, G.134, R.138, W.491, K.568, K.574, Y.648, R.649, V.650, A.653, G.675, T.676, G.677, K.680 Ligands: SO4.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:R.138, A:Y.648, A:V.650, A:A.653, A:K.680 Hydrogen bonds: A:G.677 Salt bridges: A:K.568, A:K.574 PLP.8: 15 residues within 4Å: Chain B: R.138, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, A.653, E.672, G.675, T.676, G.677, K.680 Ligands: SO4.6 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:R.138, B:Y.648, B:V.650, B:A.653, B:T.676, B:K.680 Hydrogen bonds: B:G.677 Salt bridges: B:K.568, B:K.574 PLP.12: 13 residues within 4Å: Chain C: Y.90, R.138, W.491, V.567, K.568, Y.648, R.649, V.650, G.675, T.676, G.677, K.680 Ligands: SO4.10 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:Y.90, C:R.138, C:Y.648, C:K.680 Hydrogen bonds: C:G.677 Salt bridges: C:K.568 PLP.16: 13 residues within 4Å: Chain D: Y.90, G.134, R.138, W.491, K.568, Y.648, R.649, V.650, A.653, T.676, G.677, N.678, K.680 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:Y.90, D:R.138, D:V.650, D:A.653, D:T.676, D:K.680 Hydrogen bonds: D:Y.90, D:T.676, D:G.677, D:G.677 Salt bridges: D:K.568

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barford, D. et al., The allosteric transition of glycogen phosphorylase. Nature (1989)

Release Date

1992-10-15

Peptides

GLYCOGEN PHOSPHORYLASE B: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

GLYCOGEN PHOSPHORYLASE B

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