SMTL ID : 9gwp.1

Human PPAR-gamma ligand binding domain in complex with MRL-871 with two distinct binding modes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

2 x 4F1: 4-{1-[2-chloro-6-(trifluoromethyl)benzoyl]-1H-indazol-3-yl}benzoic acid(Non-covalent)

4F1.1: 17 residues within 4Å: Chain A: K.61, F.62, K.63, H.64, G.82, C.83, R.86, S.87, I.124, L.128, L.131, L.138, I.139, S.140, M.146, L.151, M.162 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.86, A:L.128, A:L.131, A:I.139, A:L.151 Hydrogen bonds: A:K.63, A:H.64, A:S.140 Salt bridges: A:H.64 Halogen bonds: A:C.83, A:S.87 4F1.2: 18 residues within 4Å: Chain B: F.80, C.83, Q.84, R.86, S.87, I.124, Y.125, L.128, M.132, V.137, I.139, S.140, L.151, F.161, M.162, K.165, F.166, H.247 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:F.80, B:Q.84, B:R.86, B:L.128, B:L.128, B:V.137, B:I.139, B:L.151, B:M.162, B:K.165, B:F.166 Hydrogen bonds: B:S.140 Salt bridges: B:R.86 pi-Stacking: B:H.247

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koops, A.A. et al., Development and characterization of novel indazole-based PPAR-gamma partial agonists. To Be Published

Release Date

2025-10-08

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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