SMTL ID : 9h4v.1 (1 other biounit)

Crystal structure of the adduct formed upon reaction of aurothiomalate with human serum transferrin (apo-form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.02 Å

Oligo State

monomer

Ligands

4 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 3 residues within 4Å: Chain A: S.348, H.349, H.350 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:H.349 Hydrogen bonds: A:H.349, A:H.350 Salt bridges: A:H.350 CIT.2: 7 residues within 4Å: Chain A: Y.426, R.456, T.457, Y.517, P.583, H.585, R.632 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.457, A:T.457, A:Y.517, A:H.585, A:R.632 Water bridges: A:A.458 Salt bridges: A:R.456, A:R.456, A:R.632, A:R.632 CIT.3: 6 residues within 4Å: Chain A: Y.95, G.123, R.124, S.125, Y.188, K.206 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.125, A:S.125 Water bridges: A:A.126 Salt bridges: A:R.124, A:K.206, A:K.206 CIT.4: 4 residues within 4Å: Chain A: R.124, G.187, Y.188, S.189 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.188, A:S.189 Salt bridges: A:R.124

9 x AU: GOLD ION(Non-covalent)

AU.5: 2 residues within 4Å: Chain A: V.29, H.273 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.273 AU.6: 1 residues within 4Å: Chain A: H.473 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.473 AU.7: 1 residues within 4Å: Chain A: H.642 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.642 AU.8: 4 residues within 4Å: Chain A: H.25, S.28, F.274, E.281 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.25 AU.9: 2 residues within 4Å: Chain A: E.419, H.606 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.419, A:H.606 AU.10: 4 residues within 4Å: Chain A: Y.45, D.63, H.249, K.296 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.63, A:H.249 AU.11: 1 residues within 4Å: Chain A: H.598 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.598 AU.12: 3 residues within 4Å: Chain A: H.207, F.211, Y.238 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.207 AU.13: 2 residues within 4Å: Chain A: S.298, H.300 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Troisi, R. et al., Crystal structure of the adduct formed upon reaction of myochrysine with human serum transferrin (apo form). To Be Published

Release Date

2025-02-12

Peptides

Serotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serotransferrin

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