SMTL ID : 9h4v.2 (1 other biounit)

Crystal structure of the adduct formed upon reaction of aurothiomalate with human serum transferrin (apo-form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.02 Å

Oligo State

monomer

Ligands

4 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 7 residues within 4Å: Chain A: Y.426, R.456, T.457, Y.517, H.585, R.632 Ligands: CIT.4 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.426, A:T.457, A:T.457, A:Y.517, A:Y.517 Water bridges: A:A.458 Salt bridges: A:R.456, A:H.585, A:R.632, A:R.632 CIT.2: 6 residues within 4Å: Chain A: Y.95, R.124, S.125, Y.188, K.206 Ligands: CIT.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.124, A:R.124, A:S.125, A:Y.188 Water bridges: A:A.126, A:G.127 Salt bridges: A:R.124, A:K.206 CIT.3: 8 residues within 4Å: Chain A: R.124, T.181, F.186, G.187, Y.188, S.189, G.190 Ligands: CIT.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.188, A:S.189, A:G.190 Salt bridges: A:R.124 CIT.4: 6 residues within 4Å: Chain A: R.456, Y.515, G.516, Y.517, T.518 Ligands: CIT.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.456, A:Y.517, A:T.518 Salt bridges: A:R.456

10 x AU: GOLD ION(Non-covalent)

AU.5: 2 residues within 4Å: Chain A: V.29, H.273 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.273 AU.6: 1 residues within 4Å: Chain A: H.473 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.473 AU.7: 3 residues within 4Å: Chain A: K.640, H.642, R.644 No protein-ligand interaction detected (PLIP) AU.8: 3 residues within 4Å: Chain A: H.25, S.28, F.274 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.25 AU.9: 1 residues within 4Å: Chain A: H.606 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.606 AU.10: 4 residues within 4Å: Chain A: Y.45, D.63, H.249, K.296 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.63, A:H.249 AU.11: 1 residues within 4Å: Chain A: H.598 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.598 AU.12: 1 residues within 4Å: Chain A: H.289 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.289 AU.13: 1 residues within 4Å: Chain A: H.25 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.25 AU.14: 2 residues within 4Å: Chain A: D.392, H.585 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.15: 4 residues within 4Å: Chain A: N.413, K.414, S.415, N.417 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.417, A:N.417

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Troisi, R. et al., Crystal structure of the adduct formed upon reaction of myochrysine with human serum transferrin (apo form). To Be Published

Release Date

2025-02-12

Peptides

Serotransferrin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Serotransferrin

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