SMTL ID : 9hc3.1

Apo-state structure of the human metabotropic glutamate receptor 5 transmembrane domain freeze-trapped after light activation of photoswitchable ligand alloswitch-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

4 x OLA: OLEIC ACID(Non-covalent)

OLA.1: 7 residues within 4Å: Chain A: I.84, L.88, M.92, I.296, L.300, V.304, F.307 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.84, A:I.296, A:I.296, A:L.300 OLA.2: 10 residues within 4Å: Chain A: A.2, P.4, I.16, V.19, V.20, I.71, A.72, K.73, V.324 Ligands: OLA.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.16, A:V.20 OLA.3: 7 residues within 4Å: Chain A: L.30, T.33, I.37, Y.54, L.57, A.58, C.61 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.30, A:L.30, A:T.33, A:I.37, A:Y.54, A:L.57 OLA.4: 4 residues within 4Å: Chain A: V.5, R.9, V.20 Ligands: OLA.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.5, A:V.20 Salt bridges: A:R.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kondo, Y. et al., Apo-state structure of the metabotropic glutamate receptor 5 transmembrane domain obtained using a photoswitchable ligand. Protein Sci. (2025)

Release Date

2025-06-25

Peptides

Metabotropic glutamate receptor 5,Endolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Metabotropic glutamate receptor 5,Endolysin

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