SMTL ID : 9i0t.1

Crystal structure of TRIM25 PRYSPRY covalently bound to 2-chloro-1-[4-(3-methyl-4-phenyl-phenyl)carbonyl-1,4-diazepan-1-yl]ethanone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 01: 1-[4-(3-methyl-4-phenyl-phenyl)carbonyl-1,4-diazepan-1-yl]ethanone

01.1: 8 residues within 4Å: Chain A: Y.66, C.67, S.68, F.92, R.110, F.123, W.185, F.187 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.92, A:F.92, A:R.110, A:F.123, A:F.123, A:F.123, A:W.185, A:F.187 Hydrogen bonds: A:S.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McPhie, K.A. et al., Discovery and optimisation of a covalent ligand for TRIM25 and its application to targeted protein ubiquitination. Chem Sci (2025)

Release Date

2025-05-21

Peptides

E3 ubiquitin/ISG15 ligase TRIM25: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E3 ubiquitin/ISG15 ligase TRIM25

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