SMTL ID : 9inx.1

Crystal structure of DAPK1 in complex with compound 10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x 01: (~{E})-1-[2,4-bis(oxidanyl)phenyl]-3-(3-bromanyl-4-oxidanyl-phenyl)prop-2-en-1-one

01.1: 16 residues within 4Å: Chain A: L.19, G.20, S.21, G.22, A.25, V.27, A.40, K.42, I.77, L.93, E.94, L.95, V.96, M.146, I.160, D.161 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.19, A:L.19, A:V.27, A:V.27, A:I.160 Hydrogen bonds: A:S.21, A:V.96, A:V.96 Water bridges: A:K.42, A:K.42

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: F.236, K.249, R.253 4 PLIP interactions: 4 interactions with chain A Water bridges: A:F.236, A:F.236 Salt bridges: A:K.249, A:R.253

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Discovery and optimization of isoliquiritigenin as a death-associated protein kinase 1 inhibitor. Eur.J.Med.Chem. (2024)

Release Date

2024-10-09

Peptides

Death-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Death-associated protein kinase 1

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