SMTL ID : 9iuu.1

JN.1 RBD with Q493E in complex with ACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.356, E.357, H.360 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.356, A:H.360

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: W.147, R.151, W.459 Ligand excluded by PLIP

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: S.402, S.527, N.528 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.528 NAG.4: 2 residues within 4Å: Chain A: K.8, N.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.8, A:N.72 NAG.5: 2 residues within 4Å: Chain A: V.298, N.304 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain A: N.35, T.37, N.40 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.35 NAG.7: 2 residues within 4Å: Chain B: N.22, R.23 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.22, B:R.23 NAG.8: 1 residues within 4Å: Chain B: N.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, L. et al., Structural and molecular basis of the epistasis effect in enhanced affinity between SARS-CoV-2 KP.3 and ACE2. Cell Discov (2024)

Release Date

2025-01-15

Peptides

Angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Angiotensin-converting enzyme 2

Spike protein S1

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