SMTL ID : 9ivm.1

Cryo-EM structure of the GLP-1(9-36)-bound human GLP-1R-Gs complex in the presence of LSN3318839

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x 01: (2~{R})-2-[2-[1-[(1~{R})-1-[2,6-bis(chloranyl)-3-cyclopropyl-phenyl]ethyl]imidazo[4,5-c]pyridin-6-yl]phenyl]propanoic acid

01.1: 11 residues within 4Å: Chain E: V.8, Y.11, L.12 Chain F: E.115, L.118, L.119, Y.122, I.123, D.175, L.178, K.179 9 PLIP interactions: 2 interactions with chain E, 7 interactions with chain F Hydrophobic interactions: E:Y.11, E:L.12, F:L.118, F:L.119, F:Y.122 Hydrogen bonds: F:K.179 Salt bridges: F:K.179 pi-Stacking: F:Y.122 pi-Cation interactions: F:K.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Molecular basis of enhanced GLP-1 signaling mediated by GLP-1(9–36) in conjunction with LSN3318839. Acta Pharm Sin B (2024)

Release Date

2024-11-13

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Nanobody-35: D
GLP-1(9-36): E
Glucagon-like peptide 1 receptor: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
N

E
P

F
R

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody-35

GLP-1(9-36)

Glucagon-like peptide 1 receptor

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