SMTL ID : 8kgg.1

LPS-bound P2Y10 in complex with G13

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x WJS: (2~{S})-2-$l^{4}-azanyl-3-[[(2~{R})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid(Non-covalent)

WJS.1: 18 residues within 4Å: Chain E: Y.37, Y.41, R.90, Y.94, F.110, Y.114, Y.118, V.160, P.166, F.167, R.171, A.183, M.198, A.202, A.205, Y.266, H.287, L.291 14 PLIP interactions: 14 interactions with chain E Hydrophobic interactions: E:Y.118, E:V.160, E:P.166, E:F.167, E:A.202 Hydrogen bonds: E:Y.41, E:Y.94, E:Y.114, E:Y.114, E:Y.266, E:Y.266 Salt bridges: E:R.90, E:K.113, E:R.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, H. et al., Insights into lysophosphatidylserine recognition and G alpha 12/13 -coupling specificity of P2Y10. Cell Chem Biol (2024)

Release Date

2024-07-31

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-2,Guanine nucleotide-binding protein subunit alpha-13: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
scFv16: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
Putative P2Y purinoceptor 10: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

D
G

E
R

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(i) subunit alpha-2,Guanine nucleotide-binding protein subunit alpha-13

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

scFv16

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Putative P2Y purinoceptor 10

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