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SMTL ID : 6pb1.1

Cryo-EM structure of Urocortin 1-bound Corticotropin-releasing factor 2 receptor in complex with Gs protein and Nb35

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.1:	4 residues within 4Å: Chain A: V.117, Y.120, L.121, V.125 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.117, A:Y.120, A:Y.120, A:L.121, A:V.125
CLR.2:	5 residues within 4Å: Chain A: A.128, A.132, F.360, R.366, R.370 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.132, A:F.360, A:F.360, A:R.366
CLR.3:	8 residues within 4Å: Chain A: V.181, R.184, C.185, T.188, I.189, W.254 Ligands: CLR.4, PLM.9 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.181, A:V.181, A:T.188, A:I.189, A:W.254, A:W.254
CLR.4:	5 residues within 4Å: Chain A: W.152, I.189, L.227, W.231 Ligands: CLR.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.189, A:L.227, A:L.227, A:W.231

5 x PLM: PALMITIC ACID(Non-covalent)

PLM.5:	2 residues within 4Å: Chain A: V.181, C.185 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.181
PLM.6:	6 residues within 4Å: Chain A: L.312, V.313, L.324, F.342, F.357, F.361 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.313
PLM.7:	3 residues within 4Å: Chain A: V.213, F.281, R.287 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.213, A:F.281 Salt bridges: A:R.287
PLM.8:	2 residues within 4Å: Chain A: L.167, L.170 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.167, A:L.170
PLM.9:	4 residues within 4Å: Chain A: C.224, L.227, F.235 Ligands: CLR.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.227, A:F.235, A:F.235

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ma, S. et al., Molecular Basis for Hormone Recognition and Activation of Corticotropin-Releasing Factor Receptors. Mol.Cell (2020)

Release Date

2020-02-12

Peptides

Corticotropin-releasing factor receptor 2: A
Urocortin: B
Guanine nucleotide-binding protein G(s) subunit alpha isoforms short,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: C
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E
Nanobody 35: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
U

C
A

D
B

E
G

F
N

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Corticotropin-releasing factor receptor 2

Urocortin

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short,Guanine nucleotide-binding protein G(i) subunit alpha-1,Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody 35

Related Entries With Identical Sequence

2rmf.1 | 5he0.1 | 5he3.1 | 5ukm.1 | 6b3j.1 | 6cmo.1 | 6d9h.1 | 6dde.1 | 6ddf.1 | 6e3y.1 | 6k41.1 | 6k42.1 | 6kpf.1 | 6kpg.1 | 6lfm.1 | 6lfo.1 | 6lmk.1 | 6lml.1 | 6m1h.1 | 6m1i.1 | 6n4b.1 | 6nbf.1 | 6nbh.1 | 6nbi.1 | 6ni3.1 | 6niy.1 | 6oij.1 | 6oik.1 | 6orv.1 | 6os9.1 more...less...

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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