SMTL ID : 8jsr.1

Cryo-EM structure of the anamorelin-bound ghrelin receptor and Gq complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x UYI: 2-azanyl-N-[(2R)-1-[(3R)-3-[dimethylamino(methyl)carbamoyl]-3-(phenylmethyl)piperidin-1-yl]-3-(1H-indol-3-yl)-1-oxidanylidene-propan-2-yl]-2-methyl-propanamide(Non-covalent)

UYI.1: 15 residues within 4Å: Chain A: D.98, R.101, L.102, Q.119, S.122, E.123, I.177, L.209, M.212, V.213, R.282, F.285, N.304, F.308, F.311 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:R.101, A:L.102, A:L.209, A:M.212, A:V.213, A:N.304, A:F.308, A:F.311 Hydrogen bonds: A:Q.119, A:Q.119, A:S.122, A:S.122, A:E.123, A:R.282 pi-Cation interactions: A:R.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimura, Y. et al., The structure and function of the ghrelin receptor coding for drug actions. Nat.Struct.Mol.Biol. (2025)

Release Date

2025-01-22

Peptides

Growth hormone secretagogue receptor type 1: A
Engineered G-alpha-q: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
scFv16: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E
Nb35: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
C

E
G

F
N

Membrane

We predict this structure to be a membrane protein.
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Growth hormone secretagogue receptor type 1

Engineered G-alpha-q

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

scFv16

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nb35

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