SMTL ID : 9jir.1

Crystal structure of V30M-TTR in complex with ioxynil

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-tetramer

Ligands

6 x 01: ioxynil

01.1: 7 residues within 4Å: Chain A: K.47, L.49, A.140 Chain C: K.47, L.49, A.140 Ligands: 01.4 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:L.49, C:A.140, A:L.49, A:A.140 Hydrogen bonds: C:K.47, A:K.47 Water bridges: C:A.140, C:S.149 01.2: 7 residues within 4Å: Chain A: H.63, V.64, F.65, P.75, F.76, A.77, S.78 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.75 Hydrogen bonds: A:H.63 01.3: 8 residues within 4Å: Chain B: K.47, L.49, T.138, A.140 Chain D: K.47, L.49, A.140 Ligands: 01.6 8 PLIP interactions: 3 interactions with chain D, 5 interactions with chain B Hydrophobic interactions: D:L.49, D:A.140, B:L.49, B:A.140 Hydrogen bonds: D:K.47, B:K.47 Water bridges: B:A.140, B:T.151 01.4: 7 residues within 4Å: Chain A: K.47, L.49, A.140 Chain C: K.47, L.49, A.140 Ligands: 01.1 8 PLIP interactions: 3 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:L.49, C:A.140, A:L.49, A:A.140 Hydrogen bonds: C:K.47, A:K.47 Water bridges: A:A.140, A:S.149 01.5: 7 residues within 4Å: Chain C: H.63, V.64, F.65, P.75, F.76, A.77, S.78 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:P.75 Hydrogen bonds: C:H.63 01.6: 8 residues within 4Å: Chain B: K.47, L.49, A.140 Chain D: K.47, L.49, T.138, A.140 Ligands: 01.3 8 PLIP interactions: 5 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:L.49, D:A.140, B:L.49, B:A.140 Hydrogen bonds: D:K.47, B:K.47 Water bridges: D:A.140, D:T.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Repurposing of Agrochemicals as ATTRv Amyloidosis Inhibitors. J.Med.Chem. (2025)

Release Date

2025-01-22

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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