SMTL ID : 9jis.1

Crystal structure of V30M-TTR in complex with aclonifen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

homo-tetramer

Ligands

4 x 01: Aclonifen

01.1: 14 residues within 4Å: Chain A: K.47, L.49, A.140, L.142, S.149, T.151 Chain C: L.49, A.140, A.141, L.142, S.149, T.150, T.151 Ligands: 01.4 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:K.47, A:L.49, C:L.49, C:A.140 Halogen bonds: A:S.149 01.3: 14 residues within 4Å: Chain B: K.47, L.49, A.140, L.142, S.149, T.151 Chain D: L.49, A.140, A.141, L.142, S.149, T.150, T.151 Ligands: 01.6 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:K.47, B:L.49, D:A.140 Hydrogen bonds: B:S.149, B:S.149, D:S.149 Halogen bonds: B:S.149 01.4: 14 residues within 4Å: Chain A: L.49, A.140, A.141, L.142, S.149, T.150, T.151 Chain C: K.47, L.49, A.140, L.142, S.149, T.151 Ligands: 01.1 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:K.47, C:L.49, A:L.49, A:A.140 Halogen bonds: C:S.149 01.6: 14 residues within 4Å: Chain B: L.49, A.140, A.141, L.142, S.149, T.150, T.151 Chain D: K.47, L.49, A.140, L.142, S.149, T.151 Ligands: 01.3 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain D Hydrophobic interactions: B:A.140, D:K.47, D:L.49 Hydrogen bonds: B:S.149, D:S.149, D:S.149 Halogen bonds: D:S.149

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: D.131 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.131 NA.5: 1 residues within 4Å: Chain C: D.131 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Repurposing of Agrochemicals as ATTRv Amyloidosis Inhibitors. J.Med.Chem. (2025)

Release Date

2025-01-22

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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