SMTL ID : 9jl5.1

CYP105A1 R84A complexed with mevastatin (cryogenic data collection)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: F.95, I.96, H.103, R.107, F.114, I.159, L.240, L.241, A.244, G.245, T.248, T.249, I.290, A.291, A.294, R.297, A.347, F.348, G.349, V.352, H.353, C.355, L.356, G.357, A.361 Ligands: MPD.2 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:F.95, A:F.95, A:I.96, A:F.114, A:I.159, A:L.240, A:L.241, A:L.241, A:I.290, A:A.291, A:F.348, A:L.356, A:A.361 Water bridges: A:A.294 Salt bridges: A:H.103, A:R.107, A:R.297, A:H.353, A:H.353 pi-Stacking: A:F.348 Metal complexes: A:C.355

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 6 residues within 4Å: Chain A: I.96, L.240, T.248, A.291, A.294 Ligands: HEM.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.248, A:A.291, A:A.294 Water bridges: A:R.73 MPD.3: 6 residues within 4Å: Chain A: V.88, S.91, P.92, R.193, S.236, L.240 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.88 Hydrogen bonds: A:P.92, A:R.193 Water bridges: A:R.73, A:A.94

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 4 residues within 4Å: Chain A: H.57, E.58, R.61, H.344 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.57, A:E.58 Water bridges: A:E.58, A:R.61, A:R.61

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 8 residues within 4Å: Chain A: C.160, R.161, G.164, V.165, P.166, Y.167, A.213, G.214 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.161, A:R.161, A:Y.167 Water bridges: A:R.161, A:R.161, A:G.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takita, T. et al., Room temperature X-ray data collection enabled the structural determination of statin-bound CYP105A1. Acta Crystallogr. D Biol. Crystallogr. (2025)

Release Date

2025-09-24

Peptides

Vitamin D3 dihydroxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Vitamin D3 dihydroxylase

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