SMTL ID : 9khb.1

Crystal structure of wild-type human fibrinogen gamma chain C-terminal domain (gamma-nodule)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.03 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: A.36, N.37, Q.38, F.40, E.93, K.94, L.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.37, A:Q.38 Water bridges: A:K.94 GOL.2: 10 residues within 4Å: Chain A: F.157, D.159, D.160, D.163, F.166, T.167, K.200, C.201, R.237 Ligands: GOL.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.159, A:D.163, A:K.200, A:R.237, A:R.237 GOL.3: 5 residues within 4Å: Chain A: F.184, Q.191, K.200, C.201 Ligands: GOL.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.191, A:Q.191 Water bridges: A:C.201, A:D.226, A:D.226

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: D.180, D.182, F.184, G.186, N.187 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.180, A:D.180, A:G.186, H2O.5, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaido, T. et al., Crystal structure of wild-type human fibrinogen gamma chain C-terminal domain (gamma-nodule). To Be Published

Release Date

2025-11-12

Peptides

Isoform Gamma-A of Fibrinogen gamma chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform Gamma-A of Fibrinogen gamma chain

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