SMTL ID : 9l5r.1

Cryo-EM structure of the thermophile spliceosome (state ILS)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-4-1-1-1-1-1-1-1-1-1-1-2-2-2-2-2-2-2-1-1-1-1-1-1-1-mer
Ligands
1 x M7M: N,N,7-trimethylguanosine 5'-(trihydrogen diphosphate)(Non-covalent)
1 x MG: MAGNESIUM ION(Non-covalent)
1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)
6 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Li, Y. et al., Structural insights into spliceosome fidelity: DHX35-GPATCH1- mediated rejection of aberrant splicing substrates. Cell Res. (2025)
Release Date
2025-03-12
Peptides
PRP8: D
Pre-mRNA-splicing factor SYF2: E
SNU114: F
SDE2: G
Anaphase-promoting complex subunit 4-like WD40 domain-containing protein: H
CCDC12: I
Putative pre-mRNA splicing protein: J
Suppressor of forked domain-containing protein: K
Putative pre-mRNA splicing protein: L
Pre-mRNA-splicing factor SPF27: M
Pre-mRNA-processing factor 19: NOPQ
Putative bud site selection protein: R
Peptidyl-prolyl cis-trans isomerase: S
Pre-mRNA-splicing factor PRP46: T
Cell cycle control protein: U
Putative pre-mRNA splicing protein: V
Putative pre-mRNA splicing protein: W
Pre-mRNA-processing protein 45: X
PRP17: Y
Putative pre-mRNA splicing protein: Z
Pre-mRNA-splicing factor: 0
Small nuclear ribonucleoprotein E: 1a
Sm protein F: 2c
Delta(14)-sterol reductase: 3d
Small nuclear ribonucleoprotein Sm D1: 4e
Sm protein B: 5f
Small nuclear ribonucleoprotein Sm D3: 6g
Small nuclear ribonucleoprotein G: 7b
U2 small nuclear ribonucleoprotein A': 8
U2 small nuclear ribonucleoprotein B'-like protein: 9
Nineteen complex-related protein 2-domain-containing protein: h
G-patch domain-containing protein: i
RNA helicase: j
Putative cyclophilin protein: l
Unknown protein: m
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
D
A
E
B
F
C
G
D
H
E
I
F
J
I
K
J
L
L
M
K
N
q
O
t
P
r
Q
s
R
N
S
S
T
T
U
U
V
M
W
0
X
R
Y
W
Z
P
0
Y
1
a
a
j
2
b
c
l
3
c
d
m
4
d
e
o
5
e
f
p
6
f
g
u
7
g
b
k
8
h
9
i
h
CY
i
Cb
j
Cc
l
Ci
m
H

PRP8

Pre-mRNA-splicing factor SYF2

SNU114

SDE2

Anaphase-promoting complex subunit 4-like WD40 domain-containing protein

CCDC12

Putative pre-mRNA splicing protein

Suppressor of forked domain-containing protein

Putative pre-mRNA splicing protein

Pre-mRNA-splicing factor SPF27

Pre-mRNA-processing factor 19

Putative bud site selection protein

Peptidyl-prolyl cis-trans isomerase

Pre-mRNA-splicing factor PRP46

Cell cycle control protein

Putative pre-mRNA splicing protein

Putative pre-mRNA splicing protein

Pre-mRNA-processing protein 45

PRP17

Putative pre-mRNA splicing protein

Pre-mRNA-splicing factor

Small nuclear ribonucleoprotein E

Sm protein F

Delta(14)-sterol reductase

Small nuclear ribonucleoprotein Sm D1

Sm protein B

Small nuclear ribonucleoprotein Sm D3

Small nuclear ribonucleoprotein G

U2 small nuclear ribonucleoprotein A'

U2 small nuclear ribonucleoprotein B'-like protein

Nineteen complex-related protein 2-domain-containing protein

G-patch domain-containing protein

RNA helicase

Putative cyclophilin protein

Unknown protein

Related Entries With Identical Sequence

4uq8.1 | 4wz7.1 | 5cod.1 | 5cod.2 | 5cod.3 | 5cod.4 | 5cod.5 | 5cod.6 | 6msh.1 | 6omb.1 | 6opc.1 | 6r7l.1 | 7fd4.1 | 7fd5.1 | 7fid.1 | 7fie.1 | 7fiz.1 | 7ln2.1 | 7ln3.1 | 7ln4.1 | 7ln5.1 | 7mhs.1 | 7nvr.1 | 7pks.1 | 7y8r.1 | 8b5r.1 | 8b6l.1 | 8rbx.1 | 9esh.1 | 9esi.1  more...