SMTL ID : 9lvh.1

Crystal structure of the mouse RIP3 kinase domain in complexed with Tricetin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

homo-dimer

Ligands

2 x MYF: 5,7-DIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE(Non-covalent)

MYF.1: 11 residues within 4Å: Chain A: V.36, A.49, L.74, T.95, R.96, F.97, M.98, E.99, N.100, G.101, L.150 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.49, A:L.74, A:F.97, A:M.98 Hydrogen bonds: A:T.95, A:R.96, A:M.98, A:E.99 MYF.2: 8 residues within 4Å: Chain B: A.49, T.95, R.96, F.97, M.98, E.99, G.101, L.150 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.97, B:M.98 Hydrogen bonds: B:T.95, B:R.96, B:M.98, B:E.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, H. et al., Identification of RIPK3 as a target of flavonoids for anti-necroptosis in vitro. Bioorg.Chem. (2025)

Release Date

2025-05-07

Peptides

Receptor-interacting serine/threonine-protein kinase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Receptor-interacting serine/threonine-protein kinase 3

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