SMTL ID : 9mnw.1

Cryo-EM structure of human MPC in complex with GW604714

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x 01: (5E)-5-({(5P)-5-[6-(4-acetylpiperazin-1-yl)-3-nitropyridin-2-yl]-2-fluorophenyl}methylidene)-1,3-thiazolidine-2,4-dione

01.1: 11 residues within 4Å: Chain A: N.33, Y.62, F.66, V.73, L.80 Chain B: F.42, K.49, W.82, Y.85, S.86, L.96 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:W.82, B:Y.85, B:L.96, A:V.73 pi-Stacking: B:W.82, B:W.82 pi-Cation interactions: B:W.82, B:W.82 Halogen bonds: B:W.82 Hydrogen bonds: A:N.33, A:Y.62, A:H.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, Z. et al., Structure of mitochondrial pyruvate carrier and its inhibition mechanism. Nature (2025)

Release Date

2025-03-05

Peptides

Mitochondrial pyruvate carrier 1: A
Mitochondrial pyruvate carrier 2: B
Fab_8D3_2 heavy chain: C
Fab_8D3_2 light chain: D
Nanobody: E
MBP-PrA/G: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

E
C

F
F

Mitochondrial pyruvate carrier 1

Mitochondrial pyruvate carrier 2

Fab_8D3_2 heavy chain

Fab_8D3_2 light chain

Nanobody

MBP-PrA/G

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