SMTL ID : 9mnx.1

Cryo-EM structure of human MPC in complex with UK5099 in LMNG

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.11 Å

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x I2R: (E)-2-cyano-3-(1-phenylindol-3-yl)prop-2-enoic acid(Non-covalent)

I2R.1: 11 residues within 4Å: Chain A: K.49, W.82, N.93, L.96, N.100 Chain B: N.33, Y.62, F.66, F.69, L.80, H.84 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:L.96, B:F.66, B:F.69, B:L.80 Hydrogen bonds: A:K.49, A:N.100, B:N.33, B:Y.62 Salt bridges: A:K.49, B:H.84 pi-Stacking: A:Y.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, Z. et al., Structure of mitochondrial pyruvate carrier and its inhibition mechanism. Nature (2025)

Release Date

2025-03-05

Peptides

Mitochondrial pyruvate carrier 2: A
Mitochondrial pyruvate carrier 1: B
Fab_8D3_2 heavy chain: C
Fab_8D3_2 light chain: D
Nanobody: E
MBP-PrA/G: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
D

D
E

E
C

F
F

Mitochondrial pyruvate carrier 2

Mitochondrial pyruvate carrier 1

Fab_8D3_2 heavy chain

Fab_8D3_2 light chain

Nanobody

MBP-PrA/G

Related Entries With Identical Sequence