SMTL ID : 9mnz.1

Cryo-EM structure of human MPC in complex with UK5099 in nanodiscs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.73 Å

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x I2R: (E)-2-cyano-3-(1-phenylindol-3-yl)prop-2-enoic acid(Non-covalent)

I2R.1: 11 residues within 4Å: Chain C: K.49, W.82, N.93, L.96, N.100 Chain D: N.33, Y.62, F.66, F.69, L.80, H.84 10 PLIP interactions: 5 interactions with chain D, 5 interactions with chain C Hydrophobic interactions: D:F.66, C:W.82, C:L.96 Hydrogen bonds: D:N.33, C:K.49, C:N.100 Salt bridges: D:H.84, C:K.49 pi-Stacking: D:F.69, D:F.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, Z. et al., Structure of mitochondrial pyruvate carrier and its inhibition mechanism. Nature (2025)

Release Date

2025-03-05

Peptides

Fab_8D3_2 heavy chain: A
Nanobody: B
Mitochondrial pyruvate carrier 2: C
Mitochondrial pyruvate carrier 1: D
MBP-PrA/G: E
Fab_8D3_2 light chain: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

C
B

D
A

E
F

F
E

Fab_8D3_2 heavy chain

Nanobody

Mitochondrial pyruvate carrier 2

Mitochondrial pyruvate carrier 1

MBP-PrA/G

Fab_8D3_2 light chain

Related Entries With Identical Sequence