- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 10 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.3: 3 residues within 4Å:- Chain H: L.51, Y.103, N.104
No protein-ligand interaction detected (PLIP)NAG-NAG.4: 4 residues within 4Å:- Chain H: Q.169, N.170, T.189, N.191
1 PLIP interactions:1 interactions with chain H- Hydrophobic interactions: H:Q.169
NAG-NAG.5: 3 residues within 4Å:- Chain G: L.51, Y.103, N.104
No protein-ligand interaction detected (PLIP)NAG-NAG.6: 5 residues within 4Å:- Chain D: S.5
- Chain G: Q.169, N.170, T.189, N.191
No protein-ligand interaction detected (PLIP)NAG-NAG.7: 4 residues within 4Å:- Chain D: R.332, N.339, Q.341, N.350
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:R.332
NAG-NAG.8: 4 residues within 4Å:- Chain B: R.332, N.339, Q.341, N.350
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.332, B:R.332
NAG-NAG.9: 4 residues within 4Å:- Chain A: R.327, N.334, Q.336, N.345
No protein-ligand interaction detected (PLIP)NAG-NAG.10: 5 residues within 4Å:- Chain A: G.207, H.209, N.231, K.354, H.355
No protein-ligand interaction detected (PLIP)NAG-NAG.11: 5 residues within 4Å:- Chain C: E.179, H.209, N.231, K.354, H.355
No protein-ligand interaction detected (PLIP)NAG-NAG.12: 5 residues within 4Å:- Chain C: R.327, E.329, N.334, Q.336, N.345
No protein-ligand interaction detected (PLIP)- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
NAG.13: 4 residues within 4Å:- Chain A: N.239, T.241, H.349, K.360
No protein-ligand interaction detected (PLIP)NAG.14: 5 residues within 4Å:- Chain B: G.213, H.215, N.237, E.357, K.359
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.215, B:N.237, B:K.359
NAG.15: 2 residues within 4Å:- Chain B: N.35, S.37
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.35, B:S.37
NAG.16: 6 residues within 4Å:- Chain C: N.239, T.241, D.242, H.349, I.351, K.360
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:I.351, C:K.360
- Hydrogen bonds: C:D.242, C:D.242
NAG.17: 4 residues within 4Å:- Chain D: H.215, N.237, E.357, K.359
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.237, D:E.357
NAG.18: 2 residues within 4Å:- Chain D: N.35, S.37
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.35, D:S.37
NAG.19: 2 residues within 4Å:- Chain G: D.255, N.270
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:D.255
NAG.21: 2 residues within 4Å:- Chain H: D.255, N.270
2 PLIP interactions:2 interactions with chain H- Hydrogen bonds: H:D.255, H:D.255
- 2 x CA: CALCIUM ION(Non-covalent)
CA.20: 5 residues within 4Å:- Chain G: D.153, E.201, A.202, L.249, D.250
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:D.153, G:E.201, G:A.202, G:L.249, G:D.250
CA.22: 5 residues within 4Å:- Chain H: D.153, E.201, A.202, L.249, D.250
5 PLIP interactions:5 interactions with chain H- Metal complexes: H:D.153, H:E.201, H:A.202, H:L.249, H:D.250
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fang, C. et al., Gating and noelin clustering of native Ca2+-permeable AMPA receptors. Nature (2025)
- Release Date
- 2025-07-02
- Peptides
- Glutamate receptor 1: AC
Glutamate receptor 4: BD
11B8 scFv: EF
Noelin: GH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-2-2-2-2-mer
- Ligands
- 2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 10 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fang, C. et al., Gating and noelin clustering of native Ca2+-permeable AMPA receptors. Nature (2025)
- Release Date
- 2025-07-02
- Peptides
- Glutamate receptor 1: AC
Glutamate receptor 4: BD
11B8 scFv: EF
Noelin: GH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CB
BD
DE
EF
FG
GH
H