SMTL ID : 9nr8.1

The structure of cerebellar GluA1/A4 ATD

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.53 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: N.45, S.47, D.48, R.74 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.2: 4 residues within 4Å: Chain C: N.45, S.47, D.48, R.74 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.107

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG-NAG.3: 4 residues within 4Å: Chain D: R.332, N.339, Q.341, N.350 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain B: R.332, N.339, Q.341, N.350 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 3 residues within 4Å: Chain A: N.334, Q.336, N.345 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 3 residues within 4Å: Chain A: H.209, N.231, K.354 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain C: E.179, H.209, N.231, K.354 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 3 residues within 4Å: Chain C: N.334, Q.336, N.345 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.9: 5 residues within 4Å: Chain A: Q.236, N.239, T.241, I.351, K.360 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.351 Hydrogen bonds: A:N.239 NAG.10: 3 residues within 4Å: Chain B: H.215, N.237, E.357 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.237, B:E.357 NAG.11: 5 residues within 4Å: Chain C: Q.236, N.239, T.241, I.351, K.360 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.351 Hydrogen bonds: C:N.239 NAG.12: 3 residues within 4Å: Chain D: H.215, N.237, E.357 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.237, D:E.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fang, C. et al., Gating and noelin clustering of native Ca2+-permeable AMPA receptors. Nature (2025)

Release Date

2025-07-02

Peptides

Glutamate receptor 1: AC
Glutamate receptor 4: BD
11B8 scFv: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

E
E

F
F

Glutamate receptor 1

Glutamate receptor 4

11B8 scFv

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