SMTL ID : 9nu1.1

Uromodulin filament lattice interface from human urine

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.513, T.515, P.517 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.515, A:T.515 NAG-NAG.4: 2 residues within 4Å: Chain C: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 5 residues within 4Å: Chain D: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 4 residues within 4Å: Chain A: N.396, H.399, T.401, S.426 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.3: 3 residues within 4Å: Chain B: N.396, H.399, S.426 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.426, B:S.426

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 4 residues within 4Å: Chain D: W.230, N.232, G.233, K.246 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, A.N. et al., Structural basis of human uromodulin filament networks in uropathogen capture. Structure (2025)

Release Date

2025-05-21

Peptides

Uromodulin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
S

Uromodulin

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