SMTL ID : 9nu3.1

Uromodulin filament lattice in the kinked arrangement from human urine

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 5.00 Å

Oligo State

homo-18-mer

Ligands

26 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: G.201, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain B: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain B: G.201, W.202, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 5 residues within 4Å: Chain C: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 2 residues within 4Å: Chain D: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 4 residues within 4Å: Chain D: G.201, W.202, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 2 residues within 4Å: Chain E: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 6 residues within 4Å: Chain E: R.200, G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 2 residues within 4Å: Chain F: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.17: 5 residues within 4Å: Chain F: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.19: 5 residues within 4Å: Chain G: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.21: 6 residues within 4Å: Chain H: G.201, W.202, Q.263, N.275, L.276, T.277 No protein-ligand interaction detected (PLIP) NAG-NAG.22: 2 residues within 4Å: Chain I: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.24: 3 residues within 4Å: Chain I: G.201, Q.263, N.275 No protein-ligand interaction detected (PLIP) NAG-NAG.25: 2 residues within 4Å: Chain J: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.26: 2 residues within 4Å: Chain K: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.28: 4 residues within 4Å: Chain K: G.201, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.29: 2 residues within 4Å: Chain L: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.32: 5 residues within 4Å: Chain M: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.34: 5 residues within 4Å: Chain N: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.35: 2 residues within 4Å: Chain O: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.37: 5 residues within 4Å: Chain O: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.38: 2 residues within 4Å: Chain P: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.39: 2 residues within 4Å: Chain Q: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.40: 2 residues within 4Å: Chain R: N.513, T.515 No protein-ligand interaction detected (PLIP)

14 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 3 residues within 4Å: Chain A: N.396, T.398, H.399 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.5: 5 residues within 4Å: Chain B: N.396, E.397, H.399, S.426 Chain R: T.453 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.426 NAG-NAG-BMA-MAN.7: 4 residues within 4Å: Chain A: T.453 Chain C: N.396, H.399, S.426 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.10: 5 residues within 4Å: Chain B: T.453 Chain D: N.396, T.398, H.399, S.426 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:S.426, B:T.453 NAG-NAG-BMA-MAN.13: 4 residues within 4Å: Chain E: N.396, T.398, H.399, S.426 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:S.426 NAG-NAG-BMA-MAN.16: 5 residues within 4Å: Chain F: N.396, T.398, H.399, S.426 Chain J: T.453 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:S.426 NAG-NAG-BMA-MAN.18: 6 residues within 4Å: Chain G: N.396, E.397, H.399, S.426 Chain H: G.452, T.453 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.20: 6 residues within 4Å: Chain E: G.452, T.453 Chain H: N.396, T.398, H.399, S.426 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.23: 6 residues within 4Å: Chain F: G.452, T.453 Chain I: N.396, T.398, H.399, S.426 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:S.426 NAG-NAG-BMA-MAN.27: 6 residues within 4Å: Chain K: N.396, T.398, H.399, S.426 Chain O: G.452, T.453 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.30: 6 residues within 4Å: Chain L: N.396, E.397, H.399, S.426 Chain P: G.452, T.453 2 PLIP interactions: 2 interactions with chain L Hydrogen bonds: L:S.426, L:S.426 NAG-NAG-BMA-MAN.31: 4 residues within 4Å: Chain M: N.396, H.399, S.426 Chain N: T.453 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.33: 5 residues within 4Å: Chain K: T.453 Chain N: N.396, E.397, H.399, S.426 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.36: 4 residues within 4Å: Chain O: N.396, T.398, H.399, S.426 No protein-ligand interaction detected (PLIP)

13 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.41: 2 residues within 4Å: Chain A: N.232, D.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.233 NAG.42: 5 residues within 4Å: Chain B: N.232, K.246, C.248, C.256, D.259 No protein-ligand interaction detected (PLIP) NAG.43: 2 residues within 4Å: Chain C: N.232, D.259 No protein-ligand interaction detected (PLIP) NAG.44: 5 residues within 4Å: Chain D: N.232, K.246, C.248, C.256, D.259 No protein-ligand interaction detected (PLIP) NAG.45: 5 residues within 4Å: Chain E: N.232, G.233, K.246, C.248, D.259 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:G.233 NAG.46: 4 residues within 4Å: Chain F: N.232, K.246, C.248, D.259 No protein-ligand interaction detected (PLIP) NAG.47: 2 residues within 4Å: Chain G: N.232, K.246 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:G.233 NAG.48: 4 residues within 4Å: Chain H: N.232, G.233, K.246, D.259 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:G.233 NAG.49: 3 residues within 4Å: Chain I: N.232, K.246, D.259 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:N.232 NAG.50: 5 residues within 4Å: Chain K: N.232, K.246, C.248, C.256, D.259 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:G.233 NAG.51: 2 residues within 4Å: Chain M: N.232, K.246 No protein-ligand interaction detected (PLIP) NAG.52: 4 residues within 4Å: Chain N: W.230, N.232, C.248, D.259 No protein-ligand interaction detected (PLIP) NAG.53: 5 residues within 4Å: Chain O: N.232, K.246, C.248, C.256, D.259 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, A.N. et al., Structural basis of human uromodulin filament networks in uropathogen capture. Structure (2025)

Release Date

2025-05-21

Peptides

Uromodulin: ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

C
D

D
E

E
J

F
G

G
B

H
N

I
P

J
F

K
K

L
H

M
I

N
O

O
Q

P
R

Q
L

R
M

Uromodulin

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