SMTL ID : 9nu2.1

Uromodulin filament lattice in the straight arrangement from human urine

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 4.80 Å

Oligo State

homo-18-mer

Ligands

27 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 6 residues within 4Å: Chain A: R.200, G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain B: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 6 residues within 4Å: Chain B: R.200, G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 5 residues within 4Å: Chain C: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 6 residues within 4Å: Chain D: R.200, G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 2 residues within 4Å: Chain E: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 5 residues within 4Å: Chain E: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 2 residues within 4Å: Chain F: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 2 residues within 4Å: Chain G: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.17: 5 residues within 4Å: Chain G: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.18: 2 residues within 4Å: Chain H: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.20: 5 residues within 4Å: Chain H: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.22: 5 residues within 4Å: Chain I: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.24: 5 residues within 4Å: Chain J: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.25: 2 residues within 4Å: Chain K: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.27: 5 residues within 4Å: Chain K: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.28: 2 residues within 4Å: Chain L: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.29: 2 residues within 4Å: Chain M: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.31: 5 residues within 4Å: Chain M: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.32: 2 residues within 4Å: Chain N: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.34: 5 residues within 4Å: Chain N: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.36: 5 residues within 4Å: Chain O: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.38: 5 residues within 4Å: Chain P: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.39: 2 residues within 4Å: Chain Q: N.513, T.515 No protein-ligand interaction detected (PLIP) NAG-NAG.41: 5 residues within 4Å: Chain Q: G.201, W.202, Q.263, N.275, L.276 No protein-ligand interaction detected (PLIP) NAG-NAG.42: 2 residues within 4Å: Chain R: N.513, T.515 No protein-ligand interaction detected (PLIP)

15 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 5 residues within 4Å: Chain A: N.396, E.397, H.399, S.426 Chain E: T.453 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:T.453, A:S.426 NAG-NAG-BMA-MAN.5: 5 residues within 4Å: Chain B: N.396, E.397, H.399, S.426 Chain F: T.453 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.426 NAG-NAG-BMA-MAN.7: 5 residues within 4Å: Chain C: N.396, T.398, H.399, S.426 Chain D: T.453 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.426 NAG-NAG-BMA-MAN.9: 5 residues within 4Å: Chain A: T.453 Chain D: N.396, E.397, H.399, S.426 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:S.426, A:T.453 NAG-NAG-BMA-MAN.12: 4 residues within 4Å: Chain B: T.453 Chain E: N.396, H.399, S.426 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain B Hydrogen bonds: E:S.426, B:T.453 NAG-NAG-BMA-MAN.16: 6 residues within 4Å: Chain G: N.396, T.398, H.399, S.426 Chain K: G.452, T.453 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.19: 6 residues within 4Å: Chain H: N.396, T.398, H.399, S.426 Chain L: G.452, T.453 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:S.426, H:S.426 NAG-NAG-BMA-MAN.21: 5 residues within 4Å: Chain I: N.396, E.397, H.399, S.426 Chain J: T.453 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.23: 5 residues within 4Å: Chain G: T.453 Chain J: N.396, E.397, H.399, S.426 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.26: 5 residues within 4Å: Chain H: T.453 Chain K: N.396, T.398, H.399, S.426 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.30: 5 residues within 4Å: Chain M: N.396, E.397, T.398, H.399, S.426 1 PLIP interactions: 1 interactions with chain M Hydrogen bonds: M:S.426 NAG-NAG-BMA-MAN.33: 7 residues within 4Å: Chain N: N.396, E.397, T.398, H.399, S.426 Chain R: G.452, T.453 2 PLIP interactions: 2 interactions with chain N Hydrogen bonds: N:S.426, N:S.426 NAG-NAG-BMA-MAN.35: 5 residues within 4Å: Chain O: N.396, T.398, H.399, S.426 Chain P: T.453 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.37: 6 residues within 4Å: Chain M: G.452, T.453 Chain P: N.396, E.397, H.399, S.426 2 PLIP interactions: 2 interactions with chain P Hydrogen bonds: P:S.426, P:S.426 NAG-NAG-BMA-MAN.40: 6 residues within 4Å: Chain N: G.452, T.453 Chain Q: N.396, T.398, H.399, S.426 No protein-ligand interaction detected (PLIP)

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.43: 4 residues within 4Å: Chain A: N.232, K.246, C.248, D.259 Ligand excluded by PLIP NAG.44: 5 residues within 4Å: Chain B: N.232, G.233, K.246, C.248, D.259 Ligand excluded by PLIP NAG.45: 4 residues within 4Å: Chain C: N.232, K.246, C.248, D.259 Ligand excluded by PLIP NAG.46: 2 residues within 4Å: Chain D: N.232, D.259 Ligand excluded by PLIP NAG.47: 4 residues within 4Å: Chain E: N.232, G.233, K.246, D.259 Ligand excluded by PLIP NAG.48: 4 residues within 4Å: Chain G: N.232, G.233, K.246, D.259 Ligand excluded by PLIP NAG.49: 3 residues within 4Å: Chain H: N.232, K.246, D.259 Ligand excluded by PLIP NAG.50: 4 residues within 4Å: Chain I: N.232, K.246, C.248, D.259 Ligand excluded by PLIP NAG.51: 4 residues within 4Å: Chain J: N.232, K.246, C.248, D.259 Ligand excluded by PLIP NAG.52: 3 residues within 4Å: Chain K: N.232, K.246, D.259 Ligand excluded by PLIP NAG.53: 6 residues within 4Å: Chain M: N.232, G.233, K.246, C.248, C.256, D.259 Ligand excluded by PLIP NAG.54: 3 residues within 4Å: Chain N: N.232, K.246, D.259 Ligand excluded by PLIP NAG.55: 3 residues within 4Å: Chain O: N.232, K.246, D.259 Ligand excluded by PLIP NAG.56: 5 residues within 4Å: Chain P: N.232, G.233, K.246, C.248, D.259 Ligand excluded by PLIP NAG.57: 5 residues within 4Å: Chain Q: N.232, K.246, C.248, C.256, D.259 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, A.N. et al., Structural basis of human uromodulin filament networks in uropathogen capture. Structure (2025)

Release Date

2025-05-21

Peptides

Uromodulin: ABCDEFGHIJKLMNOPQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

C
B

D
D

E
E

F
F

G
K

H
G

I
I

J
M

K
O

L
Q

M
L

N
H

O
J

P
N

Q
P

R
R

Uromodulin

Related Entries With Identical Sequence